Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens ...    30   7.2  

>AK128348-1|BAC87394.1|  129|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46490 fis, clone THYMU3027540. ).
          Length = 129

 Score = 29.9 bits (64), Expect = 7.2
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -1

Query: 519 CASHVMV*VSGS--CRLLTYICVYVCVRASVRGARTFRCIHYIYL 391
           C SH+ + V  +  C  +TY+CVY      +    T+ C+++IY+
Sbjct: 70  CISHIYMYVYHAYMCMYITYMCVY---HTYMHVYHTYMCVYHIYI 111



 Score = 29.5 bits (63), Expect = 9.5
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
 Frame = -1

Query: 525 VRCASHVMV*VSGSCRLLTYICVY---VCV 445
           V C SH  V ++  C  +T+ICVY   VCV
Sbjct: 5   VLCISHTYVYITHICMYITHICVYQTHVCV 34


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 75,967,468
Number of Sequences: 237096
Number of extensions: 1506734
Number of successful extensions: 3336
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 3055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3299
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6324506272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)