Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile (un...    29   1.9  
Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U00035-3|AAA50645.1|  548|Caenorhabditis elegans Egg sterile
           (unfertilizable) protein2 protein.
          Length = 548

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 559 EKFNCSGTKGRRPVCVACDGIS 494
           ++F CSG+    P+ V CDG+S
Sbjct: 219 DQFKCSGSDACLPISVKCDGVS 240


>Z50071-1|CAA90408.1| 1022|Caenorhabditis elegans Hypothetical
           protein T07D4.4a protein.
          Length = 1022

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +3

Query: 444 ARTHIHKYKLGADTSPTLIPSHATHTGRLPFV 539
           A  H+     G  T+PT+  S    +GRLPFV
Sbjct: 400 ANKHVVGGGFGRSTAPTVNTSVGNESGRLPFV 431


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,691,410
Number of Sequences: 27780
Number of extensions: 263801
Number of successful extensions: 693
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 664
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 693
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)