Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0272.Seq
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              25   0.43 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    24   0.98 
DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex det...    23   1.7  
DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex det...    23   1.7  
DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex det...    23   1.7  
DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex det...    23   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.3  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   6.9  
DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex det...    21   9.2  

>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -2

Query: 383 REKKNHWKIPKKCVFC 336
           R KKN   +P +CVFC
Sbjct: 28  RRKKNKKPLPTECVFC 43


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 0.98
 Identities = 12/51 (23%), Positives = 24/51 (47%)
 Frame = +3

Query: 336 TEYTFFWDFPMIFFLTYFINIYSVCIGRCGRRAQRHARTHIHKYKLGADTS 488
           T +TF +  PMI  + Y+  I S  +       ++  + ++   +  A+TS
Sbjct: 214 TIFTFSYCIPMILIIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNANTS 264


>DQ325087-1|ABD14101.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN--LIYSFNRV 248
           NN + ++ +KYNYN  + N  L Y+ N +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325086-1|ABD14100.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN--LIYSFNRV 248
           NN + ++ +KYNYN  + N  L Y+ N +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325085-1|ABD14099.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN--LIYSFNRV 248
           NN + ++ +KYNYN  + N  L Y+ N +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115


>DQ325084-1|ABD14098.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN--LIYSFNRV 248
           NN + ++ +KYNYN  + N  L Y+ N +
Sbjct: 87  NNTIHNNNYKYNYNNNNYNKKLYYNINYI 115


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 12/48 (25%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
 Frame = -3

Query: 559 EKFNCSGTKGRRPVCVACDGISVGLVSAPN--LYLCICVRACLCARRP 422
           E +    ++   P      GI      +PN  + +C+C+R C    RP
Sbjct: 69  ESYLAESSRSIDPCASKYCGIGKECELSPNSTIAVCVCMRKCPRRHRP 116


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN 224
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 168 NNILLSHLHKYNYNAVSIN 224
           NN + ++ +KYNYN  + N
Sbjct: 86  NNTIHNNNYKYNYNNNNYN 104


>DQ325082-1|ABD14096.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 192 HKYNYNAVSINLIYSFNRV 248
           +KYNYN     L Y+ N +
Sbjct: 96  YKYNYNNNCKKLYYNINYI 114


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,165
Number of Sequences: 438
Number of extensions: 3391
Number of successful extensions: 13
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)