Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0270.Seq
         (675 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   5.7  
SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|ch...    26   5.7  
SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase Ubp9|Schizosac...    25   7.6  
SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.6  
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch...    25   10.0 
SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73 family...    25   10.0 

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 13/39 (33%), Positives = 22/39 (56%)
 Frame = -1

Query: 534  VGELDQ*IVLHLKTRLATQAQEQIVNVVLSYTFRVFKNI 418
            +GE +Q  +    + L T   +Q++N+V+ Y  R F NI
Sbjct: 1912 IGEYEQIDISRKASELFTDLSQQLLNIVIKY--RNFDNI 1948


>SPAPJ760.03c |adg1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 166

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 145 MSSIFRTVSFGLFVIILKLAADTGTPVNCTNANRSIYLFRNIIC 14
           + SIF+T+    F +   + AD+G  +  T A  ++YL R + C
Sbjct: 3   LRSIFQTLCAVSF-LAGSVFADSGVSIVSTPATTTVYLVRTVDC 45


>SPBC1703.12 |ubp9||ubiquitin C-terminal hydrolase
           Ubp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 2/105 (1%)
 Frame = -3

Query: 562 SRCSGCQQPSRRTRSVNSASFKDAAGHTS-TGTNR*CSLVIYI*SFQKYKRHSCV-LNRP 389
           ++C  C+  + R  S    S  D   HTS T   R  S    + S  K+    C  L   
Sbjct: 242 TKCLTCENITSRDESFLDLSI-DIENHTSVTSCLRSFSASEMLSSKNKFHCDVCKSLQEA 300

Query: 388 TYSVII*QSPRVPSEHTYTHTYNK*YSSRRRATYTIIYKTDFLFY 254
              + I + P++ S H     YN+      +  YTI++  +   +
Sbjct: 301 EKRMKIKKLPKILSLHLKRFKYNETQEGHDKLFYTIVFTNEMRLF 345


>SPBC1604.17c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +1

Query: 487 QPRL*MKHYLLIEFSYWAADNQNSEK-DIIYHSI 585
           +P+   K+YL+    +W  D Q+S   ++ +H I
Sbjct: 196 EPKWKTKNYLISHLIFWIIDQQSSSSIEVCWHRI 229


>SPBC1289.02c |uap2||U2 snRNP-associated protein
           Uap2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 367

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 52  HLYSLQESQYRQQVLI*LQINRTRQCEKC 138
           H+++L+E     ++LI L+ + T + EKC
Sbjct: 255 HIFTLEELDKTPELLIDLKDDITEEAEKC 283


>SPBC17G9.02c |||RNA polymerase II accessory factor, Cdc73
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 371

 Score = 25.0 bits (52), Expect = 10.0
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -2

Query: 245 YLFEGILVAQAEAASAEGG 189
           +L EGI V  AEAA A GG
Sbjct: 226 FLEEGIFVPPAEAAHAAGG 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,611,243
Number of Sequences: 5004
Number of extensions: 51331
Number of successful extensions: 117
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)