Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0270.Seq
         (675 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0982 - 33303500-33304011,33304091-33304208,33304606-333047...    30   1.9  

>02_05_0982 - 33303500-33304011,33304091-33304208,33304606-33304726,
            33304811-33304877,33304968-33305102,33305186-33305297,
            33305852-33306009,33306177-33306300,33306406-33306542,
            33307284-33307403,33307878-33308025,33308674-33308931,
            33309090-33309127,33309232-33309674,33309761-33309845,
            33310063-33310123,33310277-33310453,33311611-33312408,
            33314394-33314693
          Length = 1303

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 404  TGVSFIFLKTLNVYDKTTLTICSCACVASRV 496
            T +  +FL +LN++ K  L IC CA + +R+
Sbjct: 930  TALFQVFLLSLNLFIKVKLQICECAVMTNRL 960


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,418,390
Number of Sequences: 37544
Number of extensions: 280043
Number of successful extensions: 507
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1714968940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)