Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0270.Seq
         (675 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)                    29   4.5  
SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)                   28   7.9  

>SB_19633| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           +TYT+TY   Y+     TYT +Y   +++ +  +Y+ V+
Sbjct: 34  YTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVY 72



 Score = 31.1 bits (67), Expect = 0.85
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           +TYT+TY   Y+     TYT  Y   +++ +  +Y+ V+
Sbjct: 28  YTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVY 66



 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           +TYT+TY   Y+     TYT  Y   +++ +  +Y+ V+
Sbjct: 30  YTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVY 68



 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/39 (30%), Positives = 22/39 (56%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           +TYT+TY   Y+     TYT  Y   +++ +  +Y+ V+
Sbjct: 32  YTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVY 70



 Score = 29.5 bits (63), Expect = 2.6
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           +TYT+TY   Y+     TY  +Y   +++ +  +Y+ V+
Sbjct: 36  YTYTYTYTYTYTYTYTYTYVYVYVYVYVYVYVYVYVYVY 74



 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -3

Query: 343 HTYTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           + YT+TY   Y+     TYT  Y   + + +  +Y+ V+
Sbjct: 26  YIYTYTYTYTYTYTYTYTYTYTYTYTYTYVYVYVYVYVY 64


>SB_34661| Best HMM Match : Fz (HMM E-Value=0.00016)
          Length = 486

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -3

Query: 337 YTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           Y+HTY   YS   R  Y++ Y+T +   ++  Y   +
Sbjct: 267 YSHTYRTRYSLTSRTRYSLTYRTRYARTYRTRYSHTY 303



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 337 YTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIYLRVF 227
           Y  TY   YS   R  Y+  Y+T +   ++ IYL  +
Sbjct: 291 YARTYRTRYSHTYRTRYSHTYRTRYSHTYRTIYLHTY 327



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 337 YTHTYNK*YSSRRRATYTIIYKTDFLFYFKIIY 239
           Y+HTY   YS   R  Y+  Y+T +L  ++  Y
Sbjct: 299 YSHTYRTRYSHTYRTRYSHTYRTIYLHTYRTRY 331


>SB_53179| Best HMM Match : BTB (HMM E-Value=3.3e-21)
          Length = 604

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 72  VPVSAASFNIITNKPNETVRKMLDISFC*KI*IRLQRDVPSLR*RSFCLS 221
           VPV A    +  +K  E ++ MLD S C  +  R   ++P L+   F LS
Sbjct: 282 VPVPAPEIKVEDSKFAEDMKCMLDRSTCYDVSFRFGSNLPLLQAHRFVLS 331


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,840,715
Number of Sequences: 59808
Number of extensions: 366335
Number of successful extensions: 738
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1733301648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)