Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0270.Seq
         (675 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) coll...    27   9.2  
J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.        27   9.2  

>X56979-1|CAA40299.1| 1758|Caenorhabditis elegans alpha1(IV) collagen
            protein.
          Length = 1758

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 242  LFEGILVAQAEAASAEGGDISLQPNLYFLTKTYVEHFSHCLVRFICNYIKTCCRYWDS 69
            ++ G       AA AEG   SLQ     L +     F  C  R  CNY  T   +W S
Sbjct: 1666 MWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWPS 1723


>J05067-1|AAB59179.1|  313|Caenorhabditis elegans clb-2 protein.
          Length = 313

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 19/58 (32%), Positives = 23/58 (39%)
 Frame = -2

Query: 242 LFEGILVAQAEAASAEGGDISLQPNLYFLTKTYVEHFSHCLVRFICNYIKTCCRYWDS 69
           ++ G       AA AEG   SLQ     L +     F  C  R  CNY  T   +W S
Sbjct: 221 MWTGYSFVMHTAAGAEGTGQSLQSPGSCLEEFRAVPFIECHGRGTCNYYATNHGFWPS 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,300,277
Number of Sequences: 27780
Number of extensions: 283299
Number of successful extensions: 592
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 592
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1529108810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)