Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0267X.Seq
         (603 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3UIP9 Cluster: Sensor protein; n=1; Oceanicaulis alexa...    35   1.7  
UniRef50_Q9RV55 Cluster: Sensor protein; n=2; Deinococcus|Rep: S...    34   2.3  
UniRef50_A0NXH0 Cluster: Sensor protein; n=1; Stappia aggregata ...    33   3.9  
UniRef50_Q70K82 Cluster: Putative chromosome partitioning ATPase...    33   5.2  
UniRef50_Q684D3 Cluster: Putative uncharacterized protein; n=1; ...    32   9.1  
UniRef50_A1GAN6 Cluster: Periplasmic sensor signal transduction ...    32   9.1  

>UniRef50_A3UIP9 Cluster: Sensor protein; n=1; Oceanicaulis
           alexandrii HTCC2633|Rep: Sensor protein - Oceanicaulis
           alexandrii HTCC2633
          Length = 508

 Score = 34.7 bits (76), Expect = 1.7
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 484 HSVITSRDGAVEVAERSG*GAMYRCRLPLV 573
           HS+IT  DGA+    R G GA++R  LP++
Sbjct: 473 HSIITDHDGAITAENRPGGGAVFRFCLPVI 502


>UniRef50_Q9RV55 Cluster: Sensor protein; n=2; Deinococcus|Rep:
           Sensor protein - Deinococcus radiodurans
          Length = 383

 Score = 34.3 bits (75), Expect = 2.3
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +1

Query: 475 TKSHSVITSRDGAVEVAERSG*GAMYRCRLPLVND 579
           T +  V+T+  GA++V +  G GA +R RLPL +D
Sbjct: 342 TIAQQVVTAHAGAIDVLDTPGGGATFRVRLPLPDD 376


>UniRef50_A0NXH0 Cluster: Sensor protein; n=1; Stappia aggregata IAM
           12614|Rep: Sensor protein - Stappia aggregata IAM 12614
          Length = 598

 Score = 33.5 bits (73), Expect = 3.9
 Identities = 11/39 (28%), Positives = 26/39 (66%)
 Frame = +1

Query: 481 SHSVITSRDGAVEVAERSG*GAMYRCRLPLVNDHIVSLE 597
           ++ ++    G+++ A R G GA++  RLP+ ++H+++ E
Sbjct: 560 AYKIVHDFSGSLKAANRDGGGAVFTMRLPVADEHVLAAE 598


>UniRef50_Q70K82 Cluster: Putative chromosome partitioning ATPase;
           n=2; Corynebacterineae|Rep: Putative chromosome
           partitioning ATPase - Gordonia westfalica
          Length = 237

 Score = 33.1 bits (72), Expect = 5.2
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
 Frame = +1

Query: 340 PKHTVLYTHYEQHKVLSDGAQRWSGGYALRH---DIHGTVATARRDVHTKSHSVI 495
           P H  LY    QH V++D  +RW+G +       D H  ++ A     + +H+VI
Sbjct: 80  PGHPDLYDQMPQHDVVADALERWAGEWDTEWVIVDTHPGISPAAAGALSVAHAVI 134


>UniRef50_Q684D3 Cluster: Putative uncharacterized protein; n=1;
           Sulfolobus virus STSV1|Rep: Putative uncharacterized
           protein - Sulfolobus virus STSV1
          Length = 731

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 19/51 (37%), Positives = 26/51 (50%)
 Frame = +1

Query: 4   FLFYNYLLYKTIIH*NIQVCLNFWTQVPNTGQSSKIILPLQTPYCSSTRHT 156
           +LF NY+ Y T+   N QV +N +  VP    S  I+   QT   + T HT
Sbjct: 205 YLFLNYIQYPTLQITNNQVAINNFPPVPVKPVSEVIVTQNQTIVSNVTFHT 255


>UniRef50_A1GAN6 Cluster: Periplasmic sensor signal transduction
           histidine kinase precursor; n=2; Salinispora|Rep:
           Periplasmic sensor signal transduction histidine kinase
           precursor - Salinispora arenicola CNS205
          Length = 525

 Score = 32.3 bits (70), Expect = 9.1
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +1

Query: 487 SVITSRDGAVEVAERSG*GAMYRCRLPLVN 576
           +++ +  G VEVAE  G GA +R RLPL +
Sbjct: 489 ALVAAHGGTVEVAETPGGGATFRVRLPLAS 518


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 523,257,555
Number of Sequences: 1657284
Number of extensions: 8684931
Number of successful extensions: 22551
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 22009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22547
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 42732687689
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)