Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0267X.Seq
         (603 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    24   0.86 
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    24   1.1  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   8.0  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 24.2 bits (50), Expect = 0.86
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = -3

Query: 88  LGPESK--NLNIPVYFNVLLFCTINSY 14
           L PE +  +L I  Y+N+L FC I  Y
Sbjct: 315 LVPEEQVYHLEIEKYYNILYFCRIMVY 341


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +1

Query: 1   FFLFYNYLLYKTI-IH*NIQVCLNFWTQVPNTGQSSKIILPLQT 129
           F LFY +  YKTI  H    + L++    P     S  ILPL T
Sbjct: 14  FLLFYLFYCYKTIKQHIYSLISLSYLPGPPVNDIISGNILPLYT 57


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
          monooxygenase protein.
          Length = 505

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 1  FFLFYNYLLYKTI 39
          F LFY +  YKTI
Sbjct: 14 FLLFYLFYCYKTI 26


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,799
Number of Sequences: 336
Number of extensions: 2566
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15248386
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)