Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0267X.Seq
         (603 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           27   2.8  
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    26   3.7  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    25   6.4  
SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans i...    25   6.4  
SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein 2|S...    25   6.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    25   8.5  

>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 67  NFWTQVPNTGQSSKIILPLQTPYCSSTRHTN 159
           NFW+   N  +  K+I+PL  P   S + TN
Sbjct: 104 NFWSACKNLEKDKKVIVPLAEPL--SAKDTN 132


>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = -1

Query: 420 VAATPALSSIREDFMLFIMCI*YSMFRRFNRFV 322
           +A+TP +S + ED+++ +    YSMF+   + +
Sbjct: 588 IASTP-MSKLYEDYLVMLFAFHYSMFQVMTKLI 619


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -3

Query: 460 APLRPYRVCRVGER 419
           APL P   CRVGER
Sbjct: 103 APLNPIDACRVGER 116


>SPBP8B7.25 |cyp4||cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 201

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 261 RTAFLDGHHVVF 296
           +T +LDGHHVVF
Sbjct: 141 KTPWLDGHHVVF 152


>SPAC4G9.07 |mug133||S. pombe specific UPF0300 family protein
           2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.4 bits (53), Expect = 6.4
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +2

Query: 95  DNHQKLSFPYRHHIARRRVTLIE 163
           +NH +++FPY+ H   + V  I+
Sbjct: 460 NNHSQITFPYKRHNIHKSVDSIQ 482


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 549 HSPSPASLCYFYRSVSRCNNRMAFSVYVAS 460
           H PS  S   F+RS  RC+     S +V++
Sbjct: 266 HDPSLLSSSKFFRSSPRCSTPSVSSTFVSA 295


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,611
Number of Sequences: 5004
Number of extensions: 37881
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)