Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0267X.Seq
         (603 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)               33   0.13 
SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)                   29   3.8  
SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)                     27   8.8  
SB_15065| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  

>SB_1646| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 534

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = +1

Query: 331 IKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGT 447
           I P  HT+  +H   H+  S G Q  +GGY +RH + G+
Sbjct: 229 ISPSSHTLPRSHRSFHE--SSGIQALAGGYPIRHSVSGS 265


>SB_1875| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 360

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
 Frame = +1

Query: 319 YNKSIKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATARRDVHTKSHSVIT 498
           ++K ++   +  L    E+HK+L +    +  G++  H I  TV T +  +   S  +I+
Sbjct: 50  FSKILEKLIYNQLIFFLEKHKILFEFQFGFRKGHSTEHAILETVETLKSSIDQASSPIIS 109

Query: 499 S---RDGAVEVA 525
               RD A+E++
Sbjct: 110 KTFLRDSALEIS 121


>SB_35938| Best HMM Match : BTB (HMM E-Value=8.5e-24)
          Length = 467

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 507 VSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALS 397
           VS+CN    F  +VA R  D     + E V  TP LS
Sbjct: 350 VSQCNFGKTFLSWVAGRDLDEIALKLPEPVRVTPGLS 386


>SB_50320| Best HMM Match : PHR (HMM E-Value=0.042)
          Length = 310

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 15/37 (40%), Positives = 18/37 (48%)
 Frame = -1

Query: 507 VSRCNNRMAFSVYVASRRCDRTVYVVSESVAATPALS 397
           VS+CN    F  +VA    D     + E V  TPALS
Sbjct: 140 VSQCNFGKTFLSWVAGGYLDEIALKLPEPVRVTPALS 176


>SB_15065| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 65

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 49  NIQVCLNFWTQVP-NTGQSSKIILPLQTPYCSSTRHTN 159
           N + CL  +T+   NT  S +I++   +PYC+S    N
Sbjct: 6   NAKCCLRIFTEKALNTHHSCQILIDDSSPYCTSRSGEN 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,898,611
Number of Sequences: 59808
Number of extensions: 294927
Number of successful extensions: 758
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 758
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1463691625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)