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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0267X.Seq
         (603 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati...    29   3.1  
At3g54570.1 68416.m06038 calmodulin-binding protein-related cont...    28   4.1  
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O...    27   7.2  
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O...    27   7.2  

>At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative
           / NADPH-ferrihemoprotein reductase, putative similar to
           NADPH-ferrihemoprotein reductase NADPH-cytochrome P450
           oxydoreductase isoform 1 [Populus balsamifera subsp.
           trichocarpa x Populus deltoides] GI:13183562, SP|P37116
           NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR)
           [Vigna radiata] {Phaseolus aureus}
          Length = 692

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
 Frame = +1

Query: 367 YEQHKVLSDGAQRW----SGGYALRHDIHGTVATARRDVHTKSHSVITSRDG 510
           Y QHK++   AQ W      GY     + G      RDVH   H+++  ++G
Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLY---VCGDAKGMARDVHRTLHTIVQEQEG 668


>At3g54570.1 68416.m06038 calmodulin-binding protein-related
           contains similarity to potato calmodulin-binding protein
           PCBP GI:17933110 from [Solanum tuberosum]
          Length = 417

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/52 (26%), Positives = 24/52 (46%)
 Frame = +1

Query: 316 YYNKSIKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATARRDV 471
           Y   +++P   TV   H +  +     A+ W   YAL+H +   V   ++DV
Sbjct: 355 YIQTTVEPSNETVDLRHQDMDE--RKKAEEWMIDYALQHTVSKLVVERKKDV 404


>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 21  FIVQNNNTLKYTGMFKFLDSGPKH-WTIIKN 110
           F+V+++  LKY G+       PKH W +++N
Sbjct: 304 FLVEDDPNLKYLGLNALSIVAPKHLWAVLEN 334


>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
           SP|O14617 Adapter-related protein complex 3 delta 1
           subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
           profile: PF01602 Adaptin N terminal region
          Length = 869

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 21  FIVQNNNTLKYTGMFKFLDSGPKH-WTIIKN 110
           F+V+++  LKY G+       PKH W +++N
Sbjct: 304 FLVEDDPNLKYLGLNALSIVAPKHLWAVLEN 334


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,351,333
Number of Sequences: 28952
Number of extensions: 191366
Number of successful extensions: 479
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 471
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 478
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1197101088
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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