BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= pg--0267X.Seq (603 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putati... 29 3.1 At3g54570.1 68416.m06038 calmodulin-binding protein-related cont... 28 4.1 At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 27 7.2 At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 27 7.2 >At4g24520.1 68417.m03515 NADPH-cytochrome p450 reductase, putative / NADPH-ferrihemoprotein reductase, putative similar to NADPH-ferrihemoprotein reductase NADPH-cytochrome P450 oxydoreductase isoform 1 [Populus balsamifera subsp. trichocarpa x Populus deltoides] GI:13183562, SP|P37116 NADPH-cytochrome P450 reductase (EC 1.6.2.4) (CPR) [Vigna radiata] {Phaseolus aureus} Length = 692 Score = 28.7 bits (61), Expect = 3.1 Identities = 16/52 (30%), Positives = 24/52 (46%), Gaps = 4/52 (7%) Frame = +1 Query: 367 YEQHKVLSDGAQRW----SGGYALRHDIHGTVATARRDVHTKSHSVITSRDG 510 Y QHK++ AQ W GY + G RDVH H+++ ++G Sbjct: 620 YVQHKMMEKAAQVWDLIKEEGYLY---VCGDAKGMARDVHRTLHTIVQEQEG 668 >At3g54570.1 68416.m06038 calmodulin-binding protein-related contains similarity to potato calmodulin-binding protein PCBP GI:17933110 from [Solanum tuberosum] Length = 417 Score = 28.3 bits (60), Expect = 4.1 Identities = 14/52 (26%), Positives = 24/52 (46%) Frame = +1 Query: 316 YYNKSIKPPKHTVLYTHYEQHKVLSDGAQRWSGGYALRHDIHGTVATARRDV 471 Y +++P TV H + + A+ W YAL+H + V ++DV Sbjct: 355 YIQTTVEPSNETVDLRHQDMDE--RKKAEEWMIDYALQHTVSKLVVERKKDV 404 >At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O14617 Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam profile: PF01602 Adaptin N terminal region Length = 869 Score = 27.5 bits (58), Expect = 7.2 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 21 FIVQNNNTLKYTGMFKFLDSGPKH-WTIIKN 110 F+V+++ LKY G+ PKH W +++N Sbjct: 304 FLVEDDPNLKYLGLNALSIVAPKHLWAVLEN 334 >At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O14617 Adapter-related protein complex 3 delta 1 subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam profile: PF01602 Adaptin N terminal region Length = 869 Score = 27.5 bits (58), Expect = 7.2 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%) Frame = +3 Query: 21 FIVQNNNTLKYTGMFKFLDSGPKH-WTIIKN 110 F+V+++ LKY G+ PKH W +++N Sbjct: 304 FLVEDDPNLKYLGLNALSIVAPKHLWAVLEN 334 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,351,333 Number of Sequences: 28952 Number of extensions: 191366 Number of successful extensions: 479 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 471 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 478 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1197101088 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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