Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0262.Seq
         (689 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    31   0.007
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    25   0.58 
DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory pro...    23   2.4  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    23   3.1  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   3.1  
DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory pro...    22   4.1  
DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory pro...    22   4.1  
AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450 ...    22   4.1  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.2  
AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    21   7.2  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    21   9.5  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   9.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   9.5  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 31.5 bits (68), Expect = 0.007
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
 Frame = +2

Query: 413 PLNPKANREKMTQIMFETFNT-PAMYVAIQAVLRCTRPVVPPVS-CWTPATVSPTPCPST 586
           PL    NR    Q  +      PAM V  +  LRC   VVPP   C  P+T+ P P    
Sbjct: 165 PLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRC---VVPPTEDCDVPSTIPPPPPEED 221

Query: 587 KDTHSP 604
            D++ P
Sbjct: 222 DDSNIP 227


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +2

Query: 311 IVTNWDDMEKIWHHTFYNELRVAPEEHPVLLT 406
           +VT+W + E+I++     +L V     PV+LT
Sbjct: 158 VVTDWVNFERIYYKLTKKKLSVFFGNKPVILT 189


>DQ855500-1|ABH88187.1|  126|Tribolium castaneum chemosensory
           protein 14 protein.
          Length = 126

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL++N+P
Sbjct: 82  GVRKVLHHLIKNKP 95


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 427 GQQREDDPDHVRNIQHARHVRRHPSRA 507
           GQ    DP+ V   +   H+  HP +A
Sbjct: 903 GQYTTKDPNEVTCDEEEGHISYHPDKA 929


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +3

Query: 645 RLPHGGSSPSAATRS 689
           +L HGG +PS AT++
Sbjct: 313 KLKHGGPTPSDATKA 327


>DQ855502-1|ABH88189.1|  126|Tribolium castaneum chemosensory
           protein 16 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>DQ855495-1|ABH88182.1|  126|Tribolium castaneum chemosensory
           protein 9 protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -3

Query: 183 GTRREEHHLLRNRP 142
           G R+  HHL+ N+P
Sbjct: 82  GVRKVIHHLIENKP 95


>AF263514-1|AAF74206.1|  127|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 127

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +1

Query: 280 PDPQIPHRTRNRH 318
           PD  +P RT NRH
Sbjct: 110 PDNFLPERTANRH 122


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = +3

Query: 570 HRAHLRRIRTPPRHPASGLSRSRP 641
           H+A +R +  PP+       RS P
Sbjct: 62  HKAPIRPVALPPKREIPSPKRSSP 85


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 349 MPNLLHVIPVSDDSVFD 299
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 349 MPNLLHVIPVSDDSVFD 299
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 349 MPNLLHVIPVSDDSVFD 299
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 6/17 (35%), Positives = 11/17 (64%)
 Frame = -2

Query: 349 MPNLLHVIPVSDDSVFD 299
           +P++  +IP  DD+  D
Sbjct: 355 LPDISEIIPTGDDTTMD 371


>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 14/51 (27%), Positives = 19/51 (37%)
 Frame = +3

Query: 522 RSYHRYRAGLRRRCLPHRAHLRRIRTPPRHPASGLSRSRPHRLPHGGSSPS 674
           R  H  R  +  R    R H   + +P   P +   R     +  G SSPS
Sbjct: 216 RPKHDGRGRIVERFTSDRVHAALVTSPRARPLARTCRDNRLLVLAGTSSPS 266


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 14/32 (43%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = +2

Query: 524 VVPP-VSCWTPATVSPTPCPS-TKDTHSPTPS 613
           V+PP  +    AT   +P    TKD  SPTPS
Sbjct: 22  VIPPHYNIHHGATPPQSPNQQYTKDCSSPTPS 53


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 412 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRAPLY 516
           +PQ Q    ++ P+    I H  +V+ +    P Y
Sbjct: 354 NPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNY 388


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/35 (25%), Positives = 16/35 (45%)
 Frame = +1

Query: 412 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRAPLY 516
           +PQ Q    ++ P+    I H  +V+ +    P Y
Sbjct: 302 NPQQQYYYNKNHPNSENYINHQNYVQGYQGEHPNY 336


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,205
Number of Sequences: 336
Number of extensions: 4504
Number of successful extensions: 24
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18114270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)