Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0260X.Seq
         (315 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   4.0  
AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    21   4.0  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.4  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    20   7.1  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -1

Query: 279 LNKLECSKRLKMLLEYFVHGIIEYDLGSI 193
           L+ L+ ++  K LLE      + Y+LG +
Sbjct: 387 LSLLQVAQIFKNLLENHYEEFVRYELGEL 415


>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 20.6 bits (41), Expect = 4.0
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 266 SAQSG*KCCLNIS 228
           S+Q G K CLN+S
Sbjct: 32  SSQKGQKTCLNLS 44


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +2

Query: 77  MLSLMFVLRRSKNFTSNVAIRMPPVIP 157
           MLS    L R     S V + +PP +P
Sbjct: 104 MLSERAALLRGVPTLSPVGVALPPTLP 130



 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 102 DDPRISPLTS 131
           D P +SPLTS
Sbjct: 909 DKPSVSPLTS 918


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 7/24 (29%), Positives = 12/24 (50%)
 Frame = -3

Query: 142 HSYCDVRGEILGSSQDEHQRKHLP 71
           H YC ++         ++ RK+LP
Sbjct: 424 HCYCPIKFGRKADPNGDYIRKYLP 447


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 70,878
Number of Sequences: 336
Number of extensions: 1340
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)