Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0260X.Seq
         (315 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0053 + 14109636-14109948,14110075-14110302,14112030-141121...    29   0.77 
04_01_0178 + 2006369-2006494,2006582-2006664,2007693-2007819,200...    29   1.0  
03_03_0090 + 14367033-14367279,14367402-14368205,14368314-143700...    28   1.3  
01_01_0148 - 1337494-1338057                                           27   4.1  
01_01_1018 - 8046819-8046876,8046995-8047212,8048099-8048177,804...    26   5.4  
11_06_0259 - 21757190-21758467                                         26   7.1  
12_02_0402 - 18625023-18625808                                         25   9.4  
11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135           25   9.4  
07_03_0794 + 21562995-21563004,21564151-21565799                       25   9.4  

>03_03_0053 +
           14109636-14109948,14110075-14110302,14112030-14112181,
           14112305-14112578,14112687-14112739
          Length = 339

 Score = 29.1 bits (62), Expect = 0.77
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +2

Query: 146 PVIPVNHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           P+  V  YLG+   NK+ P+ Y +  C K+ +  FS++ H++  K
Sbjct: 248 PIGCVPGYLGIFP-NKLSPKDYDVFGCIKWLND-FSKY-HNHALK 289


>04_01_0178 +
           2006369-2006494,2006582-2006664,2007693-2007819,
           2008579-2008638,2009606-2009735,2009821-2010047,
           2010226-2010318,2010395-2010466,2011392-2011532,
           2012045-2012047,2012387-2012443,2012909-2012995,
           2013081-2013116
          Length = 413

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 19/59 (32%), Positives = 25/59 (42%)
 Frame = +2

Query: 134 IRMPPVIPVNHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTH 310
           I+M P  P  H+L     N     +    P   YSS+I   F H+N F   +   L TH
Sbjct: 53  IKMVP--PGPHFLYYCSPNSYGQNNLHEKPHIDYSSTICDPFRHANEFAPTVGFFLTTH 109


>03_03_0090 +
           14367033-14367279,14367402-14368205,14368314-14370039,
           14370135-14370219,14370398-14370457,14370744-14370836
          Length = 1004

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 164 HYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFE 262
           H L +LK  KI P   +I  C +YS    S F+
Sbjct: 821 HALHILKAEKIFPTESNIADCIRYSEMNISGFD 853


>01_01_0148 - 1337494-1338057
          Length = 187

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +3

Query: 57  DENTFGKCFR*CSSCDDP 110
           DE   G+CFR C +C DP
Sbjct: 72  DELEPGQCFRQCEACRDP 89


>01_01_1018 -
           8046819-8046876,8046995-8047212,8048099-8048177,
           8048455-8048540,8048698-8048983,8049063-8049205,
           8049308-8049508,8049626-8049754,8050463-8050738,
           8050823-8051098,8051364-8052364,8052452-8052634,
           8052865-8052937,8053205-8053313,8053622-8053785
          Length = 1093

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = -1

Query: 114 FLDRRKTNISESICQRCFHQSRTKVRGSKAIRY 16
           +++    N   SIC RC H S  K +  K   Y
Sbjct: 561 YVEVENGNDKSSICGRCHHLSSAKAKYQKRFSY 593


>11_06_0259 - 21757190-21758467
          Length = 425

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -3

Query: 139 SYCDVRGEILGSSQDEHQRKHLPK 68
           S+ D RG ++ S+QD   R+H P+
Sbjct: 136 SFTDDRGRLMYSNQDNWMRRHDPQ 159


>12_02_0402 - 18625023-18625808
          Length = 261

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -3

Query: 154 DNWGHSYCDVRGEIL 110
           D WGH + D+ GEIL
Sbjct: 6   DRWGHVHRDIFGEIL 20


>11_01_0225 + 1761282-1762232,1762601-1762726,1762818-1763135
          Length = 464

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = -1

Query: 276 NKLECSKRLKMLLEYFVHGIIEYDLGSILL 187
           N LEC   L ML+ + + GI+ YD GS +L
Sbjct: 345 NILECFPELSMLVIWRMDGIV-YDKGSDVL 373


>07_03_0794 + 21562995-21563004,21564151-21565799
          Length = 552

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 105 DPRISPLTSQYECPQLSLLIITSE 176
           D   +PL+SQ+EC  LS L  T +
Sbjct: 23  DSPYTPLSSQFECDNLSALTNTPD 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,853,183
Number of Sequences: 37544
Number of extensions: 130931
Number of successful extensions: 308
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 308
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)