Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0260X.Seq
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical pr...    27   2.8  
AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormo...    27   2.8  
Z68343-4|CAA92780.2|  298|Caenorhabditis elegans Hypothetical pr...    26   5.0  
Z68342-11|CAA92777.2|  298|Caenorhabditis elegans Hypothetical p...    26   5.0  
AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical...    26   6.6  

>U22831-4|AAK20066.1|  633|Caenorhabditis elegans Hypothetical
           protein F47D12.5 protein.
          Length = 633

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +2

Query: 116 FTSNVAIRMPPVIPVNHYLGVLKTNKIEPRSYSIIPC-TKYSSSIFSRFEHSNLFKVKLS 292
           F  N A     +  + HYLGV + + +E    +++    KY   + +RF+ S   K+ ++
Sbjct: 223 FLLNTATLTSSLKSLTHYLGVHRISSVERVLENMLHLFPKYDPDLDNRFDFSECVKIIIN 282

Query: 293 AHL 301
           + L
Sbjct: 283 SAL 285


>AC006675-6|AAK84556.2|  433|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 98 protein.
          Length = 433

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 111 LDRRKTNISESICQRCFHQSRTKVRGS 31
           L+     +S  ICQ CFHQ   K++G+
Sbjct: 331 LEPTHEELSYMICQLCFHQVGKKLQGN 357


>Z68343-4|CAA92780.2|  298|Caenorhabditis elegans Hypothetical
           protein F38E11.9 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 NKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           NK+    +S++P      SIF RF H+NLFK
Sbjct: 272 NKLLKTIWSLLP-----KSIFMRFLHNNLFK 297


>Z68342-11|CAA92777.2|  298|Caenorhabditis elegans Hypothetical
           protein F38E11.9 protein.
          Length = 298

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +2

Query: 188 NKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           NK+    +S++P      SIF RF H+NLFK
Sbjct: 272 NKLLKTIWSLLP-----KSIFMRFLHNNLFK 297


>AL117195-11|CAB55019.1|  185|Caenorhabditis elegans Hypothetical
           protein Y57A10A.16 protein.
          Length = 185

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +2

Query: 200 PRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAH 298
           PR   ++ C  +++ I      S  FK K++AH
Sbjct: 126 PRDKGVLNCAAFAAGIVEAILESASFKCKVTAH 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,974,932
Number of Sequences: 27780
Number of extensions: 125208
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)