Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0260X.Seq
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        23   0.87 
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        23   0.87 
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        23   0.87 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   1.5  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    22   1.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     20   6.2  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     20   8.1  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             20   8.1  

>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIRMPPVIPVNH-----YLGVLKTN 190
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIRMPPVIPVNH-----YLGVLKTN 190
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 5/26 (19%)
 Frame = +2

Query: 128 VAIRMPPVIPVNH-----YLGVLKTN 190
           +A+  PPV+P NH     YL V++ N
Sbjct: 353 LAVPAPPVLPENHLKNAKYLDVIERN 378


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 105  RRKTNISESICQRCFHQ 55
            RR+ N++E++C   F Q
Sbjct: 966  RRRLNVNETVCSDYFSQ 982


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 22.2 bits (45), Expect = 1.5
 Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
 Frame = -1

Query: 129 TLEVKFLDRRKTNISESICQRCFHQSRTK--VRGSKAIRYRPSS 4
           +L+  F D+ + + +  +C+ C  + RTK  +   K++++R SS
Sbjct: 20  SLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHRGSS 63


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 20.2 bits (40), Expect = 6.2
 Identities = 8/24 (33%), Positives = 12/24 (50%)
 Frame = -3

Query: 142 HSYCDVRGEILGSSQDEHQRKHLP 71
           H YC VR         ++ R++LP
Sbjct: 428 HCYCPVRFGRKADPNGDYIRRYLP 451


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = +2

Query: 248 FSRFEHSNLF 277
           FS +EH N+F
Sbjct: 278 FSHYEHQNVF 287


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -2

Query: 305 CRGGPTIL 282
           C GGPTIL
Sbjct: 370 CGGGPTIL 377


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,736
Number of Sequences: 438
Number of extensions: 1729
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)