Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0260X.Seq
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3) iden...    28   1.1  
At4g10890.1 68417.m01772 expressed protein                             27   2.0  
At2g43930.1 68415.m05460 protein kinase family protein contains ...    27   2.0  
At3g49060.1 68416.m05360 protein kinase family protein / U-box d...    27   2.6  
At5g38320.1 68418.m04625 expressed protein  ; expression support...    27   3.5  
At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containi...    26   6.1  
At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15) ...    26   6.1  

>At3g26790.1 68416.m03351 transcriptional regulator (FUSCA3)
           identical to FUSCA3 GB:AAC35247 [Arabidopsis thaliana]
           (Plant J. 6, 379-387 (1994))
          Length = 313

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 20/67 (29%), Positives = 30/67 (44%)
 Frame = +2

Query: 101 RRSKNFTSNVAIRMPPVIPVNHYLGVLKTNKIEPRSYSIIPCTKYSSSIFSRFEHSNLFK 280
           RRS + + N+    PP+ P++H    L   KI+PR    +   +  +S  S      L K
Sbjct: 53  RRSSS-SFNLLSFPPPMPPISHVPTPLPARKIDPRKLRFLFQKELKNSDVSSLRRMILPK 111

Query: 281 VKLSAHL 301
               AHL
Sbjct: 112 KAAEAHL 118


>At4g10890.1 68417.m01772 expressed protein
          Length = 527

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 102 RKTNISESICQRCFHQS-RTKVRGSKAIRYRPSSN 1
           ++T I   +C RC+H S R K+R S   R   S++
Sbjct: 194 KQTKICSRVCSRCYHYSMRQKLRHSLHTRILKSNS 228


>At2g43930.1 68415.m05460 protein kinase family protein contains
           similarity to NPK1-related protein kinase 2 GI:2342425
           from [Arabidopsis thaliana]
          Length = 204

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +2

Query: 197 EPRSYSIIPCTKYSSSIFSRFEHSNLFKVKLSAHLDTHR 313
           EP    ++ C K S    S FEH  LFK  +    + H+
Sbjct: 63  EPHIVLLLQCRKKSWCFASEFEHLKLFKGYIDEDEERHK 101


>At3g49060.1 68416.m05360 protein kinase family protein / U-box
           domain-containing protein contains Pfam profile: PF00069
           Eukaryotic protein kinase domain
          Length = 805

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = +2

Query: 65  HLWQMLSLMFVLRRSKNFTSNVAIRMPPVIPVNHYLGVLKTNKIE 199
           H+W +     +  R+ N  SN    MPP++ ++      K+ K+E
Sbjct: 162 HIWFLCKGYLIFTRASNDDSNNRQTMPPLVQLDSDNETRKSEKLE 206


>At5g38320.1 68418.m04625 expressed protein  ; expression supported
           by MPSS
          Length = 212

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +2

Query: 104 RSKNFTSNVAIRMPPVIPVNHYLGVLKTNKIEPRSYSI-IPCTKYSSS 244
           RSK       +  P +IP+  +  VL+  +I  + Y + +P   Y+S+
Sbjct: 85  RSKTDKYKTGLPRPEIIPIEDFEPVLEIEEIGDQEYEVKLPLLPYNST 132


>At1g52620.1 68414.m05941 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 819

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -1

Query: 291 DNFTLNKLECSKRLKMLLEYFVHGIIEYDLGSI 193
           D F  N   CS  LK+L  Y +   IE  LG++
Sbjct: 93  DEFFSNGFACSSFLKLLARYRIFNEIEDVLGNL 125


>At1g17110.1 68414.m02085 ubiquitin-specific protease 15 (UBP15)
           almost identical to ubiquitin-specific protease 15
           GI:11993475 [Arabidopsis thaliana], 7 amino acid
           difference
          Length = 924

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -1

Query: 78  ICQRCFHQSRTKVRGSKAIRY 16
           +C RCF  ++T+    K++RY
Sbjct: 129 VCARCFGPAKTRCSRCKSVRY 149


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,468,220
Number of Sequences: 28952
Number of extensions: 113897
Number of successful extensions: 294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)