Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0258.Seq
         (673 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   3.0  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    23   3.0  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   4.0  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    22   5.3  
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    22   5.3  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    22   5.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      21   9.2  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   9.2  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 152 RIPWNSNAQAEKKTLPGPLG 93
           +IPW+ NA+A  K   G  G
Sbjct: 330 QIPWDKNAEALAKWANGQTG 349


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = -3

Query: 431 HRLHPLPVQTRHAPVIRANPYS 366
           +R HPL + + H  ++  NP S
Sbjct: 332 NRCHPLSLSSDHQAMLHHNPMS 353


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 6/28 (21%), Positives = 18/28 (64%)
 Frame = +1

Query: 382 LMTGACRVWTGSGCSRCRVWSMFVRYVR 465
           ++ G   +  G+GC R ++  ++++++R
Sbjct: 741 IIVGTLMMVLGTGCVRIKITGVWLKFLR 768


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 542 KTIYASVILNISVFEAALY*NTNSL 468
           K++YAS++    +F  A+Y N + L
Sbjct: 69  KSVYASLLCTEKIFLFAIYTNLSIL 93


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 525 TRINRLTFRTGSGPAFSGL 581
           T +N LTF T S    SGL
Sbjct: 119 TLLNTLTFHTSSNLTVSGL 137


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 525 TRINRLTFRTGSGPAFSGL 581
           T +N LTF T S    SGL
Sbjct: 119 TLLNTLTFHTSSNLTVSGL 137


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -1

Query: 106 PDLSAASSGHFGLPRRTLVFKDEG 35
           P +S++     G      VFKDEG
Sbjct: 2   PHVSSSGGDDLGSTDEVKVFKDEG 25


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 431 HRLHPLPVQTRHAPVIRANPY 369
           HRL  LP+      VI  N Y
Sbjct: 710 HRLMELPISVDRKAVIAENTY 730


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 431 HRLHPLPVQTRHAPVIRANPY 369
           HRL  LP+      VI  N Y
Sbjct: 710 HRLMELPISVDRKAVIAENTY 730


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 431 HRLHPLPVQTRHAPVIRANPY 369
           HRL  LP+      VI  N Y
Sbjct: 710 HRLMELPISVDRKAVIAENTY 730


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -3

Query: 431 HRLHPLPVQTRHAPVIRANPY 369
           HRL  LP+      VI  N Y
Sbjct: 710 HRLMELPISVDRKAVIAENTY 730


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,128
Number of Sequences: 336
Number of extensions: 3592
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17489640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)