Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0258.Seq
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC869.04 |||formamidase-like protein|Schizosaccharomyces pombe...    27   2.5  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    27   3.3  
SPBC56F2.11 |met6||homoserine O-acetyltransferase|Schizosaccharo...    25   7.5  
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    25   9.9  
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe...    25   9.9  
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    25   9.9  
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    25   9.9  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   9.9  
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    25   9.9  

>SPAC869.04 |||formamidase-like protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 598 ARKIRGRPENAGPDPVRNVRRFMRV 524
           AR I GRPEN G   ++N+ R  +V
Sbjct: 214 ARTIPGRPENGGNCDIKNLSRGSKV 238


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1142

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 415 SGCSRCRVWSMFVRYVRFSE 474
           +GC +  VW  +VR+V F E
Sbjct: 108 NGCGKSYVWPSYVRFVDFDE 127


>SPBC56F2.11 |met6||homoserine
           O-acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 378 GSDDRGVSGLDGKRMQPVPGLVDVRALCSF*R 473
           G DD+ VSGL   RM     L+  R+ CSF R
Sbjct: 218 GIDDQPVSGLGAARMS---ALLTYRSKCSFER 246


>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 52  RVFDGVTQSGLKTPPRGPGRV 114
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 738

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 13/37 (35%), Positives = 16/37 (43%)
 Frame = -1

Query: 511 YQFLRPHYIKILTR*NEHNARTSTRPGTGCIRFPSKP 401
           YQF+  H  ++LTR  E     S  P T      S P
Sbjct: 37  YQFINHHMQQLLTRPVEGTHSASVHPSTSSTSHISSP 73


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 52  RVFDGVTQSGLKTPPRGPGRV 114
           RVF G  +SGLK   +GP  V
Sbjct: 399 RVFSGTVRSGLKVRIQGPNYV 419


>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 121

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
 Frame = -1

Query: 193 MRCSSRSEPYLPSI-GFHGIRTLRQKRKLFPDLSAASSGHFGLPRRT 56
           MR +   E Y+  + G H   T  Q   LF D     + H  L RRT
Sbjct: 1   MRPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRT 47


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 18/73 (24%), Positives = 33/73 (45%)
 Frame = -1

Query: 673 SELTVERRSYRIVPIAHETKPTRLTARKIRGRPENAGPDPVRNVRRFMRVSY*IYQFLRP 494
           S+++ E  S      +  +KP+R TA K + + ++ GP+  R +  F         F + 
Sbjct: 336 SDVSTESSSQFSSRSSEYSKPSRPTAPKPKFKQDSLGPNQARAMYSFAGEQPGDLSFQKG 395

Query: 493 HYIKILTR*NEHN 455
             I I+ R   H+
Sbjct: 396 DIIDIVERSGSHD 408


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 17/58 (29%), Positives = 25/58 (43%)
 Frame = -3

Query: 422 HPLPVQTRHAPVIRANPYSEVTDPICRLPLPTLFYRLEALHLGDLLRICVRTGATSNV 249
           +PL   T   P I   PY E+ + I        F R +A  +GD L   ++    SN+
Sbjct: 205 YPLIFSTGRQPKILGKPYDEMMEAII---ANVNFDRKKACFVGDRLNTDIQFAKNSNL 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,827,399
Number of Sequences: 5004
Number of extensions: 59631
Number of successful extensions: 169
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)