Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0258.Seq
(673 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0257 - 42343493-42343528,42344215-42344271,42344272-423443... 31 0.63
06_01_0350 + 2534422-2535615 31 1.1
04_04_0883 + 29079315-29079715,29080918-29081038,29081127-290812... 31 1.1
12_02_0407 - 18654134-18654172,18654913-18655803 30 1.5
06_01_0268 + 1989069-1989293,1989938-1990020,1990136-1990357,199... 29 2.6
03_04_0090 + 17228253-17228403,17229062-17229129,17229238-172309... 29 2.6
02_02_0346 - 9214365-9214583,9214830-9214919,9215012-9215177,921... 29 2.6
12_01_0796 + 7292523-7292783,7292963-7293018,7295274-7295331,729... 29 4.5
07_03_0078 - 13147741-13148913 28 5.9
>01_07_0257 -
42343493-42343528,42344215-42344271,42344272-42344316,
42344374-42344518,42344606-42344733,42344939-42345044,
42345113-42345189,42345264-42345361,42345945-42346058,
42346154-42346294,42346418-42346502,42346721-42346849
Length = 386
Score = 31.5 bits (68), Expect = 0.63
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 292 TCCGYVYEPERHLTYIPHLNFQGP 221
+CCG+ ER+ +PHLN GP
Sbjct: 135 SCCGFEEVLERYRQIVPHLNLSGP 158
>06_01_0350 + 2534422-2535615
Length = 397
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = -3
Query: 146 PWNSNAQAEKKTLPGPLGGVFRP 78
PW S+A+ E+K LP PL +F P
Sbjct: 42 PWRSSARLERKLLPPPLPWLFLP 64
>04_04_0883 +
29079315-29079715,29080918-29081038,29081127-29081246,
29081646-29081876,29081951-29082517
Length = 479
Score = 30.7 bits (66), Expect = 1.1
Identities = 24/101 (23%), Positives = 43/101 (42%), Gaps = 1/101 (0%)
Frame = -1
Query: 514 IYQFLRPHYIKILTR*NEHNARTSTRPGTGCIRFPSKPDTPRSSE-PILIPKLRIQFADF 338
+ FL+ +K L +T P +G KP TP + E PI+ +
Sbjct: 305 VMNFLKTLILKTLKEREAAGTPKTTEPCSGSPNGQDKPPTPENLERPIICSDQK------ 358
Query: 337 PYLHYSID*RLFTLETCCGYVYEPERHLTYIPHLNFQGPQR 215
ID +F + TC ++ P++ L + + F+GP++
Sbjct: 359 -----GIDKPMFDMATCDQLLFGPKQFLDHRENNKFEGPEK 394
>12_02_0407 - 18654134-18654172,18654913-18655803
Length = 309
Score = 30.3 bits (65), Expect = 1.5
Identities = 17/55 (30%), Positives = 28/55 (50%)
Frame = +3
Query: 3 EPGSGTVSIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFCLSVRIPWNPIEGRY 167
E G+G ++++ PS+ +T P+ P R + CLS ++PI GRY
Sbjct: 115 EEGTGRLTLVNPSTGETLAVPPPPRLPPKRRHRRAPLVVSCLS--FGYHPITGRY 167
>06_01_0268 +
1989069-1989293,1989938-1990020,1990136-1990357,
1990434-1990621,1990711-1990835,1990988-1991039,
1991585-1991874,1992229-1992307,1992527-1992657
Length = 464
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 416 LPVQTRHAPVIRANPYSEVTDPICRLPLPTLFYRLEAL 303
+P Q + A I A+P + V C LP P+LF L L
Sbjct: 292 IPYQFQEATSILASPLAHVPASSCPLPAPSLFSSLPLL 329
>03_04_0090 +
17228253-17228403,17229062-17229129,17229238-17230902,
17231002-17231143,17231648-17232399
Length = 925
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 6/33 (18%)
Frame = -3
Query: 452 TNIDQTRH--RL----HPLPVQTRHAPVIRANP 372
T IDQ H R+ H +PVQ H+PV++ NP
Sbjct: 324 TQIDQPSHCQRIKNQDHSVPVQKNHSPVLKTNP 356
>02_02_0346 -
9214365-9214583,9214830-9214919,9215012-9215177,
9215601-9215911,9215944-9216566,9216779-9216968,
9217096-9217197,9217285-9217425,9217815-9218411,
9219126-9219286,9220709-9220824,9221538-9221654,
9221746-9221808,9221879-9221949
Length = 988
Score = 29.5 bits (63), Expect = 2.6
Identities = 18/52 (34%), Positives = 23/52 (44%)
Frame = -1
Query: 184 SSRSEPYLPSIGFHGIRTLRQKRKLFPDLSAASSGHFGLPRRTLVFKDEGTI 29
S + + GFHG+ L+ KL PDL + HF LVF G I
Sbjct: 195 SGEQKRLIEGAGFHGLVDLKCS-KLRPDLCSWLMEHFNPATNQLVFPGRGAI 245
>12_01_0796 +
7292523-7292783,7292963-7293018,7295274-7295331,
7295777-7295843,7296461-7296516,7296638-7296691,
7296836-7296961
Length = 225
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 422 HPLPVQTRHAPVIRANPYSEVTDPICRLPL 333
H L + RH P ++A P S + C+LPL
Sbjct: 107 HSLIIPKRHFPSLQATPPSVIAAICCKLPL 136
>07_03_0078 - 13147741-13148913
Length = 390
Score = 28.3 bits (60), Expect = 5.9
Identities = 9/25 (36%), Positives = 18/25 (72%)
Frame = +3
Query: 558 SGPAFSGLPRIFLAVSRVGFVSCAI 632
SGP + G R+F+A+S +G ++ ++
Sbjct: 223 SGPIYKGRERVFIAISDIGMLAVSL 247
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,233
Number of Sequences: 37544
Number of extensions: 435830
Number of successful extensions: 1341
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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