Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0258.Seq
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical pr...    29   3.0  
U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical pr...    28   6.9  

>Z35641-1|CAA84706.2|  863|Caenorhabditis elegans Hypothetical
           protein C38H2.1 protein.
          Length = 863

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = -1

Query: 466 NEHNARTSTRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFADFPYLH 326
           ++      TR G+ C    S+PD P     +L+ KL+I+  +    H
Sbjct: 43  HDEGCERMTRNGSVCAVEESEPDVPTQHREVLLTKLKIEIKNIMAEH 89


>U53338-1|AAA96189.2|  152|Caenorhabditis elegans Hypothetical
           protein C05E11.6 protein.
          Length = 152

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = -2

Query: 363 SYGSNLPTSLTYIILSTRGSSPWRPAADMCTNRSDI*RTSLT*IFKVRREYNGHRRKCGA 184
           +Y S L   L  I L+   +S W+   +    R +  + SL  IF+VRR Y      CG+
Sbjct: 8   AYLSLLVLILVLISLTDAHASSWKSILNS-DKRMETKQHSLESIFRVRRTYIDENENCGS 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,978,287
Number of Sequences: 27780
Number of extensions: 343617
Number of successful extensions: 1018
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1018
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)