Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0258.Seq
         (673 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g76965.1 68414.m08961 glycine-rich protein                          30   1.2  
At2g02800.2 68415.m00225 protein kinase (APK2b) identical to pro...    30   1.6  
At2g02800.1 68415.m00224 protein kinase (APK2b) identical to pro...    30   1.6  
At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identic...    29   2.8  
At5g42370.1 68418.m05159 expressed protein                             29   3.7  
At1g72520.1 68414.m08386 lipoxygenase, putative similar to lipox...    29   3.7  
At1g67560.1 68414.m07697 lipoxygenase family protein similar to ...    28   6.5  
At5g22390.1 68418.m02612 expressed protein                             27   8.6  
At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR...    27   8.6  

>At1g76965.1 68414.m08961 glycine-rich protein 
          Length = 158

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -1

Query: 436 PGTGCIRFPSKPDTPRSSEPILIPKLRIQFAD 341
           PG   + FP KP+ P    P  +P+L + F D
Sbjct: 93  PGAAIVVFPKKPEEPVKVVPTPMPQLNLFFGD 124


>At2g02800.2 68415.m00225 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 502 LRPHYIKILTR*NEHNARTSTRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 326
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At2g02800.1 68415.m00224 protein kinase (APK2b) identical to
           protein kinase APK2b [Arabidopsis thaliana]
           gi|2852449|dbj|BAA24695
          Length = 426

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
 Frame = -1

Query: 502 LRPHYIKILTR*NEHNARTSTRPGTGCIRFPSKPDTPRSSEPILIPKLRIQFA-DFPYLH 326
           LRP   ++L + ++     ST+PGTG     ++ D+PR S   ++ K   +++ D P LH
Sbjct: 352 LRPKMSEVLAKLDQLE---STKPGTGVGNRQAQIDSPRGSNGSIVQKSPRRYSYDRPLLH 408


>At3g13320.1 68416.m01677 calcium exchanger (CAX2) almost identical
           to low affinity calcium antiporter CAX2 (GI:1488267)
           [Arabidopsis thaliana]; Ca2+:Cation Antiporter (CaCA)
           Family member PMID:11500563
          Length = 441

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
 Frame = +3

Query: 24  SIIVPSSLKTSVRRGNPKWPEDAAERSGKSFLFC--LSVRIPWNPI 155
           S++   SL TS  +  PK P+++   S K  +FC  L++ +P+ P+
Sbjct: 41  SLMEQGSLSTSFPQHTPKAPKNSVLNSIKIVIFCNKLNLLLPFGPL 86


>At5g42370.1 68418.m05159 expressed protein
          Length = 447

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -3

Query: 161 PFYRIPWNSNAQAEKKTLPGPLGGVFRPL-WVTPSNTR 51
           P Y +  +   Q+ +K +P PL  + R L W TPS  R
Sbjct: 285 PLYDVTSSGLVQSVEKVVPRPLRSIVRLLFWYTPSTMR 322


>At1g72520.1 68414.m08386 lipoxygenase, putative similar to
           lipoxygenase gi:1495804 [Solanum tuberosum], gi:1654140
           [Lycopersicon esculentum], GB:CAB56692 [Arabidopsis
           thaliana]
          Length = 926

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = -1

Query: 199 PQMRCSSRSEPYLPSIGFHGIRTLRQK 119
           P  R    ++PYLPS    G+RTLR+K
Sbjct: 221 PSKRILFTNQPYLPSETPSGLRTLREK 247


>At1g67560.1 68414.m07697 lipoxygenase family protein similar to
           13-lipoxygenase GB:CAA65269 [Solanum tuberosum],
           gi:1654140 [Lycopersicon esculentum]
          Length = 917

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -1

Query: 199 PQMRCSSRSEPYLPSIGFHGIRTLRQK 119
           PQ R   RS+P LPS    GI+ LR+K
Sbjct: 209 PQARIIFRSQPCLPSETPDGIKELREK 235


>At5g22390.1 68418.m02612 expressed protein
          Length = 202

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 96  ERSGKSFLFCLSVRIPWNPIEG 161
           + S KSFL  LS   PWNP +G
Sbjct: 17  DNSPKSFLDTLSSSSPWNPSKG 38


>At1g63870.1 68414.m07233 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1031

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 149 SYRREIWFGTRRAPHLRRCPLYSLRTLK 232
           S   ++W GT+R  HL++  L++ R LK
Sbjct: 611 SQLEKLWEGTQRLTHLKKMNLFASRHLK 638


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,247,984
Number of Sequences: 28952
Number of extensions: 328400
Number of successful extensions: 925
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 925
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1422784080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)