Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CAZ0 Cluster: Chromosome undetermined scaffold_162, w...    34   3.0  
UniRef50_Q2HHF5 Cluster: Putative uncharacterized protein; n=1; ...    33   7.0  
UniRef50_O13880 Cluster: Vitamin H transporter 1 (H(+)/biotin sy...    33   9.2  

>UniRef50_A0CAZ0 Cluster: Chromosome undetermined scaffold_162,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_162,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 379

 Score = 34.3 bits (75), Expect = 3.0
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 471 VPLHVCRFVLLQNYIILFNLCINECRFNFIF 379
           + +HVC ++ L+  I + N+ +N CR+ F+F
Sbjct: 154 IHVHVCLYITLKPLIFVMNVLLNFCRYEFLF 184


>UniRef50_Q2HHF5 Cluster: Putative uncharacterized protein; n=1;
           Chaetomium globosum|Rep: Putative uncharacterized
           protein - Chaetomium globosum (Soil fungus)
          Length = 275

 Score = 33.1 bits (72), Expect = 7.0
 Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +1

Query: 199 PYNAVDWFRVIRKLLIGVFSITRF-YDLV*RVFMTSYNALRI 321
           P N VDW    R+ L G F+ + +  +L+ RVF T +N +RI
Sbjct: 68  PTNTVDWMNQRRRWLNGAFASSLYSLELLFRVFETGHNPVRI 109


>UniRef50_O13880 Cluster: Vitamin H transporter 1 (H(+)/biotin
           symporter vht1); n=1; Schizosaccharomyces pombe|Rep:
           Vitamin H transporter 1 (H(+)/biotin symporter vht1) -
           Schizosaccharomyces pombe (Fission yeast)
          Length = 568

 Score = 32.7 bits (71), Expect = 9.2
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 715 LMKICKNYKIWIYFKMYI-LKYVNKGIMNFCQFRISKIN 602
           L+K C + ++W +  MY  +  V  GI N+C   I +IN
Sbjct: 336 LLKSCLDLRVWPFILMYFGIVGVGNGIFNYCTLIIEEIN 374


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 572,214,641
Number of Sequences: 1657284
Number of extensions: 10235183
Number of successful extensions: 18511
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18383
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)