Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    33   0.054
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    27   3.5  
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    26   4.7  
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe...    26   4.7  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    26   6.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    26   6.1  

>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 32.7 bits (71), Expect = 0.054
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -1

Query: 715 LMKICKNYKIWIYFKMYI-LKYVNKGIMNFCQFRISKIN 602
           L+K C + ++W +  MY  +  V  GI N+C   I +IN
Sbjct: 336 LLKSCLDLRVWPFILMYFGIVGVGNGIFNYCTLIIEEIN 374


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 17/45 (37%), Positives = 25/45 (55%)
 Frame = -3

Query: 149  LCNRKT*IILSDRYMNLVVNIIVNT*LQLDGFIM*LLLFRKEIEY 15
            LC+RKT +    RY  +V  +++NT L+ D     L LFR +  Y
Sbjct: 3485 LCSRKT-LAPRPRYSKIVRQLLINTSLKKDTKEYWLNLFRSKNIY 3528


>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 299 VIKTRYTRS*KRVILNTPIRSFLITRN 219
           VI+T  TR  K++ILNT + SF+   N
Sbjct: 173 VIETFSTRLNKKIILNTIVTSFICWSN 199


>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 299 VIKTRYTRS*KRVILNTPIRSFLITRN 219
           VI+T  TR  K++ILNT + SF+   N
Sbjct: 173 VIETFSTRLNKKIILNTIVTSFICWSN 199


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -3

Query: 536 YNTGIFLCCEFIMICKVHISFACLC 462
           Y + +   C+ I +C +HI + C C
Sbjct: 669 YFSQVACSCKSITVCPLHIEYLCKC 693


>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 299 VIKTRYTRS*KRVILNTPIRSFLITRN 219
           VI+T  TR  K++ILNT + SF+   N
Sbjct: 173 VIETFSTRLNKKIILNTIVTSFICWSN 199


>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 379

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 299 VIKTRYTRS*KRVILNTPIRSFLITRN 219
           VI+T  TR  K++ILNT + SF+   N
Sbjct: 173 VIETFSTRLNKKIILNTIVTSFICWSN 199


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 291 NALYEVIKTRYTEY-PYKEFSYNSEPIYR 208
           N +Y+ ++   + Y PYK   YN+ P YR
Sbjct: 348 NEVYQFLQRENSPYLPYKGVFYNTRPPYR 376


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = +2

Query: 107 CIDHLI*FMFCDYIEEKLNSI 169
           C D LI F+F DY + K+  I
Sbjct: 889 CRDELITFLFVDYADSKIQDI 909


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,057
Number of Sequences: 5004
Number of extensions: 49204
Number of successful extensions: 81
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)