Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    29   2.8  
03_06_0763 + 36081546-36081669,36081755-36082170,36082280-360823...    29   3.7  
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    28   6.4  

>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
 Frame = -1

Query: 667 YILKYVNKGIMNFCQFRISKINTVIPL*RG---NLITRFHITRSIP--RITRGY 521
           Y+LKY  +G   FC FR+S   +++    G     +   H++R IP  R  R Y
Sbjct: 61  YLLKYGRRGKPKFCPFRLSNDESILIWFSGKEEKQLRLSHVSRIIPGQRTKRSY 114


>03_06_0763 +
           36081546-36081669,36081755-36082170,36082280-36082339,
           36082466-36083101
          Length = 411

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = -3

Query: 485 HISFAC-LCTCVDLCYYKTTLFY 420
           H+S AC L TC  +C Y T L+Y
Sbjct: 125 HLSRACFLGTCAPICIYSTLLYY 147


>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 667 YILKYVNKGIMNFCQFRISKINTVI 593
           Y+LKY  +G   FC FR+S   +V+
Sbjct: 26  YLLKYGRRGKPKFCPFRLSNDESVL 50


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,115,756
Number of Sequences: 37544
Number of extensions: 241427
Number of successful extensions: 330
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 330
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)