Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK094875-1|BAC04446.1|  149|Homo sapiens protein ( Homo sapiens ...    32   2.3  
AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane hel...    31   4.1  
AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens ...    30   9.5  

>AK094875-1|BAC04446.1|  149|Homo sapiens protein ( Homo sapiens
           cDNA FLJ37556 fis, clone BRCAN2028545. ).
          Length = 149

 Score = 31.9 bits (69), Expect = 2.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -3

Query: 512 CEFIMICKVHISFACLCTCVDLCYYKTTLFYSICVLTSV 396
           C  + +CK   + AC+C CV +C   +     +CV   V
Sbjct: 102 CACVYVCKRVCTCACVCMCVQVCMCASVHMCIVCVSVRV 140


>AB065580-1|BAC05810.1|  346|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 346

 Score = 31.1 bits (67), Expect = 4.1
 Identities = 18/47 (38%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
 Frame = -3

Query: 524 IFLC-CEFIMICKVHIS---FACLCTCVDLCYYKTTLFYSICVLTSV 396
           I +C C  + +C V IS   + CLC CV +C Y +   Y +CV   V
Sbjct: 53  ICVCVCVCVSMC-VSISVCVYLCLCVCVSVCVYVSVCMY-LCVFLCV 97


>AK128797-1|BAC87611.1|  201|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45585 fis, clone BRTHA3013882. ).
          Length = 201

 Score = 29.9 bits (64), Expect = 9.5
 Identities = 12/43 (27%), Positives = 20/43 (46%)
 Frame = -3

Query: 524 IFLCCEFIMICKVHISFACLCTCVDLCYYKTTLFYSICVLTSV 396
           + +C   + +C       C+C CV LC    ++   +CV  SV
Sbjct: 16  VCVCVLCVSVCVCVCLCVCVCVCVCLCLCVLSVSVCLCVCVSV 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,593,426
Number of Sequences: 237096
Number of extensions: 1488215
Number of successful extensions: 1762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1738
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8343197486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)