Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical pr...    31   1.1  
AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 depende...    30   1.9  
AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    29   4.4  

>U64845-6|AAC48028.1|  556|Caenorhabditis elegans Hypothetical
           protein F45F2.5 protein.
          Length = 556

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -1

Query: 670 MYILKYVNKGIMNFCQFRISKINTVIPL*RGNLITRFHITRSI 542
           +Y++KY+   I  F Q      N+ I L R N+I +F +  S+
Sbjct: 161 IYVVKYILAVIFTFMQMHFIFSNSKISLKRSNIIAKFGLMHSV 203


>AF025450-5|AAO38669.1|  363|Caenorhabditis elegans Skn-1 dependent
           zygotic transcriptprotein 5 protein.
          Length = 363

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -2

Query: 210 RVIGGLLFTNVN*PILLSFSSM*SQNINYIK 118
           RV+ G+ +TNV+   +L F  M   N NY+K
Sbjct: 284 RVLSGISYTNVSAQNILKFKHMPDNNKNYVK 314



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -2

Query: 210 RVIGGLLFTNVN*PILLSFSSM*SQNINYI 121
           RV+ G+ +TNV+   +L F  M   N NY+
Sbjct: 156 RVLSGISYTNVSAQNILKFKHMPDNNKNYV 185


>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 500 MICKVHISFACLCTCVDLCYYKTTLFYSICVLTSV 396
           M+   ++ F   C  V  C+Y  +LF S+C++T V
Sbjct: 70  MVIIYYLIFVLTCISVFFCFY--SLFSSLCIITQV 102


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,736,401
Number of Sequences: 27780
Number of extensions: 263157
Number of successful extensions: 542
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 528
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)