Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.71 
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   2.9  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   6.6  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   8.8  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -3

Query: 536 YNTGIFLCCEFIMICKVHISFACLCTCVDLC 444
           Y+TG F C E + + K  + +    T +  C
Sbjct: 226 YSTGNFTCLEVVFVLKRRLGYYLFHTYIPTC 256


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +3

Query: 474 EANMNFTNHYKFTAQKYPRVIRGIDRVI*KRVIRL 578
           E+N  F N  KF  QKY +  + +++VI   ++R+
Sbjct: 335 ESNTMFINILKFLKQKYVKNSK-LEKVIKHDILRM 368


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = -1

Query: 712 MKICKNYKIWIYFKMYILKYVNKGIMNFCQFRISKI 605
           M+I KN+K  +    YIL      I+ F Q   S I
Sbjct: 10  MEISKNHKEQLISNDYILDNYTSPIVEFLQQEDSSI 45


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = -3

Query: 458 CVDLCYYKTTLFYSI 414
           CVD  +YK  L Y I
Sbjct: 21  CVDANWYKNALVYQI 35


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,352
Number of Sequences: 438
Number of extensions: 3871
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)