Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0257.Seq
         (715 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g12350.1 68418.m01453 zinc finger protein, putative / regulat...    31   1.0  
At5g32405.1 68418.m03813 hypothetical protein                          30   1.8  
At3g60400.1 68416.m06755 mitochondrial transcription termination...    30   1.8  
At5g32169.1 68418.m03692 hypothetical protein                          29   4.0  
At5g19420.1 68418.m02314 zinc finger protein, putative / regulat...    28   5.3  

>At5g12350.1 68418.m01453 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1062

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -1

Query: 667 YILKYVNKGIMNFCQFRISKINTVIPL*RGN 575
           Y+LKY  +G   FC FR+S   TV+    GN
Sbjct: 27  YLLKYGRRGKPKFCPFRLSNDETVLIWFSGN 57


>At5g32405.1 68418.m03813 hypothetical protein
          Length = 256

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 192 VIPL*RGRLVPSYKKTPYRGIQYNAFL*PRITR 290
           +I L RGR+ PS++ T Y    + AF  P  TR
Sbjct: 104 LITLPRGRVPPSHRSTAYSMTSFRAFFIPHSTR 136


>At3g60400.1 68416.m06755 mitochondrial transcription termination
           factor-related / mTERF-related contains Pfam profile
           PF02536: mTERF
          Length = 558

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 7/65 (10%)
 Frame = -1

Query: 703 CKNYKIWIYF---KMYILKYVNKGIMN----FCQFRISKINTVIPL*RGNLITRFHITRS 545
           C+N ++W      K   L+Y  + +MN    FC+F +SK +  + + R   I  F + + 
Sbjct: 243 CENEEMWELMCRNKSLFLEYSEEALMNKAGYFCRFGVSKEDAALLILRNPAIMNFDLEKP 302

Query: 544 IPRIT 530
           +  +T
Sbjct: 303 VISVT 307


>At5g32169.1 68418.m03692 hypothetical protein
          Length = 258

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 192 VIPL*RGRLVPSYKKTPYRGIQYNAFL*PRITR 290
           +I L RGR+ PS+  T Y    + AF  P  TR
Sbjct: 104 LITLPRGRVSPSHHSTAYSMTSFRAFFIPHSTR 136


>At5g19420.1 68418.m02314 zinc finger protein, putative / regulator
           of chromosome condensation (RCC1) family protein similar
           to zinc finger protein [Arabidopsis thaliana]
           gi|15811367|gb|AAL08940
          Length = 1124

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 667 YILKYVNKGIMNFCQFRISKINTVI 593
           Y+LKY  +G   FC FR+S   +V+
Sbjct: 53  YLLKYGRRGKPKFCPFRLSNDESVL 77


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,379,713
Number of Sequences: 28952
Number of extensions: 224176
Number of successful extensions: 341
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1545769616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)