Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;...    44   0.002
UniRef50_Q8G861 Cluster: Putative uncharacterized protein; n=1; ...    35   1.0  
UniRef50_A1CTC8 Cluster: Nucleotide-sugar transporter, putative;...    33   4.1  
UniRef50_Q0FZ15 Cluster: Prophage MuMc02, tail tape measure prot...    32   5.4  
UniRef50_UPI00006CB34C Cluster: CTP synthase family protein; n=1...    32   7.1  
UniRef50_Q1GFZ2 Cluster: Prophage LambdaSo; type II DNA modifica...    32   7.1  
UniRef50_Q0DNB5 Cluster: Os03g0762200 protein; n=1; Oryza sativa...    31   9.4  

>UniRef50_UPI00003BFB0D Cluster: PREDICTED: hypothetical protein;
           n=1; Apis mellifera|Rep: PREDICTED: hypothetical protein
           - Apis mellifera
          Length = 133

 Score = 43.6 bits (98), Expect = 0.002
 Identities = 32/70 (45%), Positives = 38/70 (54%), Gaps = 5/70 (7%)
 Frame = +3

Query: 258 MAFMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGMVRKISE-SRSEGPAF--SPRSAG 428
           MAFMMPV+KN+WDIY +                     RK+SE S+SEGP+   SP S  
Sbjct: 1   MAFMMPVMKNEWDIYKTNRSRRSSECSNPQACR----SRKVSECSKSEGPSLSTSPGSDF 56

Query: 429 L-SP-HRSAP 452
           L SP HRS P
Sbjct: 57  LTSPAHRSVP 66


>UniRef50_Q8G861 Cluster: Putative uncharacterized protein; n=1;
           Bifidobacterium longum|Rep: Putative uncharacterized
           protein - Bifidobacterium longum
          Length = 119

 Score = 34.7 bits (76), Expect = 1.0
 Identities = 16/45 (35%), Positives = 22/45 (48%)
 Frame = +1

Query: 328 QNRRRRRGSTWEAWCGKYRSHGPKARRFHHDRQGSVLTAALRRCA 462
           Q R+R +G TW    G++    P  +R  H   G+  TA   RCA
Sbjct: 44  QQRQRHQGQTWNQQIGQHVPALPSQQRLGHHAAGNQRTADAERCA 88


>UniRef50_A1CTC8 Cluster: Nucleotide-sugar transporter, putative;
           n=8; Eurotiomycetidae|Rep: Nucleotide-sugar transporter,
           putative - Aspergillus clavatus
          Length = 616

 Score = 32.7 bits (71), Expect = 4.1
 Identities = 20/37 (54%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 345 AGFNVGGMVRKISE-SRSEGPAFSPRSAGLSPHRSAP 452
           A  NV G+    S  S SEG  FSPR AG SP +SAP
Sbjct: 543 ASSNVRGLKISTSNLSDSEGRPFSPRLAGPSPLKSAP 579


>UniRef50_Q0FZ15 Cluster: Prophage MuMc02, tail tape measure
           protein, TP901 family; n=1; Fulvimarina pelagi
           HTCC2506|Rep: Prophage MuMc02, tail tape measure
           protein, TP901 family - Fulvimarina pelagi HTCC2506
          Length = 1075

 Score = 32.3 bits (70), Expect = 5.4
 Identities = 15/32 (46%), Positives = 20/32 (62%)
 Frame = -3

Query: 418 RGENAGPSDRDSDIFRTMPPTLNPAFSADSEA 323
           R E+AG  +RD + +RTMP  +  A  AD EA
Sbjct: 417 RTESAGTVERDYEYYRTMPQGMEEARQADREA 448


>UniRef50_UPI00006CB34C Cluster: CTP synthase family protein; n=1;
           Tetrahymena thermophila SB210|Rep: CTP synthase family
           protein - Tetrahymena thermophila SB210
          Length = 608

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 56  LIQENSSLTYKFLQKPEIFLKYRH 127
           +I + SSL YK  QK EIF ++RH
Sbjct: 483 IISDKSSLAYKMYQKSEIFERHRH 506


>UniRef50_Q1GFZ2 Cluster: Prophage LambdaSo; type II DNA
           modification methyltransferase; putative; n=1;
           Silicibacter sp. TM1040|Rep: Prophage LambdaSo; type II
           DNA modification methyltransferase; putative -
           Silicibacter sp. (strain TM1040)
          Length = 697

 Score = 31.9 bits (69), Expect = 7.1
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 343 RRGSTWEAWCGKYRSHGPKARR 408
           R+G T+EAWC K RS G K  R
Sbjct: 161 RKGETFEAWCKKIRSLGGKLER 182


>UniRef50_Q0DNB5 Cluster: Os03g0762200 protein; n=1; Oryza sativa
           (japonica cultivar-group)|Rep: Os03g0762200 protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 169

 Score = 31.5 bits (68), Expect = 9.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 319 VEPQNRRRRRGSTWEAWCGKYRSHGPKARRFHHDRQ 426
           V  ++ R RRG  W  WCG + +  P  RR    R+
Sbjct: 96  VHRRSSRGRRGGRWSRWCGWWPASCPSPRRARCSRR 131


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 449,659,096
Number of Sequences: 1657284
Number of extensions: 8511920
Number of successful extensions: 25175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 24504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25164
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 25191138900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)