Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    22   3.2  
AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    21   4.3  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   5.6  
AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory recept...    21   7.4  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   7.4  

>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 3.2
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +3

Query: 204 EAISLITFQQKSHRHLREMAFMMPVVKN 287
           E I   TFQ   HR L E+ F    V+N
Sbjct: 79  EMIHRGTFQGDIHRDLTEVYFSFNSVRN 106


>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = -3

Query: 238 LFCWNVIREIASDETKKNMLA*INLTINND 149
           LFC NV+ E    +    +L    L++ ND
Sbjct: 504 LFCINVLAEACGSDITTRLLLPTVLSMAND 533


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -3

Query: 289 SFFTTGIMNAISRRWR*LFCWNVI 218
           SFF   +++  +  WR L+ W V+
Sbjct: 147 SFFLNFMLHCNNTTWRCLYRWIVL 170


>AM292364-1|CAL23176.2|  353|Tribolium castaneum gustatory receptor
           candidate 43 protein.
          Length = 353

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +3

Query: 156 FIVKFIYANIFFFVSSEAISLITFQQKSHRH 248
           FI KF YA  FF   S  + +  + +  HR+
Sbjct: 30  FIQKF-YAVAFFLALSIGVVVSIYSKSFHRN 59


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/9 (66%), Positives = 8/9 (88%)
 Frame = -2

Query: 374 PHHASHVEP 348
           P+HA+HV P
Sbjct: 51  PYHANHVNP 59


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,063
Number of Sequences: 336
Number of extensions: 2177
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 52
effective length of database: 105,113
effective search space used: 10721526
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)