Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   2.5  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   2.5  
SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   2.5  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   4.3  
SPBC2D10.08c |||mitochondrial ribosomal protein subunit Yml6|Sch...    25   5.7  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    25   7.5  
SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces pom...    24   9.9  
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    24   9.9  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    24   9.9  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 6/53 (11%)
 Frame = -3

Query: 421 DRGENAGPSDRDSDIF------RTMPPTLNPAFSADSEARRDL*ELYMSQSFF 281
           D    A P  +DS +F       ++P  +NPA++   +    L E Y+S  FF
Sbjct: 115 DTYSTAIPFSKDSSVFDAVGQQSSVPIHINPAYTNSHQNSYSLNETYLSYDFF 167


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 41   TVILCLIQENSSLTYKFLQKPEIFLK 118
            ++I CL  EN  + Y  LQK E+F +
Sbjct: 1030 SIIKCLTNENEPVCYLGLQKLELFFQ 1055


>SPCPB16A4.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 126

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 16/34 (47%), Positives = 20/34 (58%), Gaps = 5/34 (14%)
 Frame = +1

Query: 340 RRRGSTWEA--WCGKYRS--HGPKARR-FHHDRQ 426
           +R GS   A  +C +YRS  HGP+ RR   HD Q
Sbjct: 37  QRHGSRASADEFCEQYRSRSHGPQGRRSLEHDNQ 70


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 311 LRVVYVPIVLHYWHHERHLAKVAVTLLLE 225
           L ++   + + +W  ER LAK+A  LLL+
Sbjct: 204 LLLIVSSVCIPFWTFERTLAKLAKVLLLQ 232


>SPBC2D10.08c |||mitochondrial ribosomal protein subunit
           Yml6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 261

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +1

Query: 373 GKYRSHGPKARRFHHDRQGSVLTAALR 453
           G  +SHGPK R F    Q  V   A+R
Sbjct: 90  GGAKSHGPKPRDFSTKLQTQVYNLAMR 116


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 322 EPQNRRRRRGSTWEAWCGKYRSHGPKARRFHHDRQGSVLT 441
           +P+NR+ R G   ++W  K      +  RF + + GSVL+
Sbjct: 637 DPENRKMRVGCREQSWDAK------RLERFENIKAGSVLS 670


>SPCC794.06 |||TDT malic acid transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 431

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 12/32 (37%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = -1

Query: 153 MILILFFTECLYFRKI-SGFCRNL*VKLEFSW 61
           MI +  F  CL F  + +GFC    +K + SW
Sbjct: 289 MIGLGIFNFCLAFVSVVAGFCTRQRIKFKVSW 320


>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 415 GENAGPSDRDSDIFRTMPPTLNPA 344
           G N     RD+++F ++  T+NPA
Sbjct: 35  GSNISLKKRDTNVFDSVVDTINPA 58


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 13/53 (24%), Positives = 22/53 (41%)
 Frame = +3

Query: 264 FMMPVVKNDWDIYNSQXXXXXXXXXXKAGFNVGGMVRKISESRSEGPAFSPRS 422
           F+  +   D+D+  S                   ++   S+S+S GP FSP+S
Sbjct: 38  FLQSLTDRDFDVKTSYIKDESAKLFEYGERLYDNLILLSSQSKSLGPVFSPKS 90


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,842,054
Number of Sequences: 5004
Number of extensions: 35672
Number of successful extensions: 99
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)