Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0965 + 9739150-9739557                                           31   0.60 
04_04_1448 + 33679110-33679140,33679858-33680057,33680163-336802...    31   0.60 
07_03_1596 - 28012392-28012799                                         30   0.80 
04_01_0192 - 2245794-2246186,2246699-2247490                           29   1.8  
10_08_0607 + 19168164-19168358,19168594-19168716,19168791-191689...    28   4.3  
01_06_1320 + 36272716-36273339,36274222-36275762,36276349-362764...    28   4.3  
01_06_1357 + 36632992-36633621,36634003-36635136,36635525-366361...    27   7.4  
07_03_0548 + 19349943-19350290,19350372-19351100                       27   9.8  
07_01_0158 + 1111819-1111972,1113311-1114869                           27   9.8  

>08_01_0965 + 9739150-9739557
          Length = 135

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 283 RTIGTYTTLKGPVEPQNRRRRRGSTWEAWCGKY-RSHGP 396
           R  GT T + G  E + R R+R   WE WCG++ R+  P
Sbjct: 87  RRRGT-TAIGGGTESKTRERKRRERWE-WCGEFGRARAP 123


>04_04_1448 +
           33679110-33679140,33679858-33680057,33680163-33680272,
           33680372-33680591,33680672-33680794,33680892-33680960,
           33681915-33682157,33682235-33682297,33682414-33682477,
           33682740-33682810
          Length = 397

 Score = 30.7 bits (66), Expect = 0.60
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 203 GGNFSNNVPTKESPPPSRDGVHDASSEERLGHIQLSKVPS 322
           GG FS N PTK+S PP ++G++       +GHI +    S
Sbjct: 295 GGRFSRNEPTKDSAPP-QNGIN-----RNIGHIDVPNTRS 328


>07_03_1596 - 28012392-28012799
          Length = 135

 Score = 30.3 bits (65), Expect = 0.80
 Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 301 TTLKGPVEPQNRRRRRGSTWEAWCGKY-RSHGP 396
           T + G  E + R R+R   WE WCG++ R+  P
Sbjct: 92  TAIGGGTESKTRERKRRERWE-WCGEFGRARAP 123


>04_01_0192 - 2245794-2246186,2246699-2247490
          Length = 394

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/25 (52%), Positives = 16/25 (64%), Gaps = 3/25 (12%)
 Frame = -3

Query: 412 ENAGPSD---RDSDIFRTMPPTLNP 347
           EN GP+D    D+D+ R M PT NP
Sbjct: 370 ENLGPTDATWEDADVIRNMFPTFNP 394


>10_08_0607 +
           19168164-19168358,19168594-19168716,19168791-19168946,
           19169129-19169314,19169467-19169583,19169721-19169774,
           19169854-19169925,19170430-19170535,19170658-19170754,
           19171090-19171184,19172318-19172420,19172699-19172886,
           19174928-19175183,19177187-19177325
          Length = 628

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 296 VPIVLHYWHHERHLAKVAVTLLL 228
           V  + H+ HH  HL  VAV LLL
Sbjct: 7   VAFLHHHHHHHHHLLAVAVVLLL 29


>01_06_1320 +
           36272716-36273339,36274222-36275762,36276349-36276490,
           36276622-36276729,36276814-36277026,36277113-36277223,
           36278056-36278250,36278874-36279048,36279189-36279226
          Length = 1048

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
 Frame = -3

Query: 436 GLSPADRGENAGPSDRDSDIFR--TMPPTLNPAFSADS 329
           G     RGE+AG  +R+ ++FR  + PPT+  + +A S
Sbjct: 25  GAGARRRGEDAGERERELNMFRSGSAPPTIEGSLNAIS 62


>01_06_1357 +
           36632992-36633621,36634003-36635136,36635525-36636193,
           36636250-36636343,36636378-36636490
          Length = 879

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -1

Query: 312 FESCICPNRSSLLAS*TPSREGGGDSFVGTLLEKL 208
           F  C+     +L+   T  R G GD+ V   + KL
Sbjct: 728 FHGCVIGTEDALITPYTTDRTGSGDAVVAAAIRKL 762


>07_03_0548 + 19349943-19350290,19350372-19351100
          Length = 358

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +1

Query: 361 EAWCGKYRSHGPKARRFHHDRQGSVLTAALRRCA 462
           EAW G++R H P+ +  H      VL A +RR A
Sbjct: 29  EAWDGRFRLHKPRGQ--HLLTNPRVLDAIVRRAA 60


>07_01_0158 + 1111819-1111972,1113311-1114869
          Length = 570

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +2

Query: 62  QENSSLTYKFLQKPEIFLKYRHSVKNKINIIIYR 163
           Q   +  Y+ L KP+  + Y H+VK  +NI+  R
Sbjct: 471 QNAKATVYQMLWKPKHGVAYLHAVKATVNILSTR 504


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,242,998
Number of Sequences: 37544
Number of extensions: 235246
Number of successful extensions: 692
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 692
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)