Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)           29   1.9  
SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.9  
SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)          29   2.5  
SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                29   2.5  
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.8  
SB_46185| Best HMM Match : Flt3_lig (HMM E-Value=3.3)                  27   7.7  

>SB_48647| Best HMM Match : Pencillinase_R (HMM E-Value=0.17)
          Length = 1084

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/52 (30%), Positives = 23/52 (44%)
 Frame = +1

Query: 295 TYTTLKGPVEPQNRRRRRGSTWEAWCGKYRSHGPKARRFHHDRQGSVLTAAL 450
           T  +LK  +  + +   R S WE    + RSH  +A    H    S+ T AL
Sbjct: 236 TDVSLKHHISAEEQAENRASKWETKYSEVRSHLIRALNIDHAEASSLPTDAL 287


>SB_9898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1092

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 200 IGGNFSNNVPTKESPPPSRDGVHDASSEER 289
           IGG   N  P  ESPPPS    H   +E R
Sbjct: 482 IGGGIKNKTPEDESPPPSIIPNHVHENEVR 511


>SB_37049| Best HMM Match : Acylphosphatase (HMM E-Value=0.82)
          Length = 646

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +2

Query: 236 ESPPPSRDGVHDASSEERLGHIQLSKVPS 322
           ESPPP R   HD+SS E  G I L   P+
Sbjct: 611 ESPPPPRTPGHDSSSGES-GEISLPSPPT 638


>SB_27584| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 7381

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = +1

Query: 283  RTIGTYTTLKGPVEPQNRRRRRGSTWEAWCGKYRSH 390
            R   ++    GP   + R+ ++GS   AWC ++ +H
Sbjct: 7033 RASSSWNRFHGPERARLRQPKKGSYTGAWCARHNNH 7068


>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 233 KESPPPSRDGVHDASSEER 289
           +ESP P    VHDA+SEE+
Sbjct: 655 RESPSPPLTDVHDAASEEK 673


>SB_46185| Best HMM Match : Flt3_lig (HMM E-Value=3.3)
          Length = 292

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +2

Query: 131 VKNKINIIIYR*VYLR*HIFFRLIGGNFSNNV 226
           V  +IN ++ R V L  H F+R +  NF+ +V
Sbjct: 192 VAKRINFLLERVVDLNMHKFYRSVNNNFNESV 223


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,741,610
Number of Sequences: 59808
Number of extensions: 257472
Number of successful extensions: 921
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 957531822
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)