Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0253.Seq
         (465 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    27   0.32 
AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical prote...    23   6.9  
AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical prote...    23   6.9  
AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    23   6.9  
DQ080900-1|AAY89546.1|  120|Anopheles gambiae olfactory receptor...    22   9.2  
DQ080896-1|AAY89542.1|  120|Anopheles gambiae olfactory receptor...    22   9.2  
DQ080892-1|AAY89538.1|  120|Anopheles gambiae olfactory receptor...    22   9.2  
AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein ...    22   9.2  

>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 27.1 bits (57), Expect = 0.32
 Identities = 17/37 (45%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 354 NVGGMVRKISESRSEGPAFSPRSAGLSPH-RSAPAMR 461
           N    +RKI  SR      SPRS G  P  RS PA R
Sbjct: 242 NAHASIRKIPPSRRNPRRRSPRSGGRWPSCRSPPARR 278


>AJ439060-1|CAD27752.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 311 LRVVYVPIVLHYWHHERHLAKVAVTLLLERY*RNCLR 201
           +R ++ P V   W H   LA     L  E+  R C+R
Sbjct: 213 VRPMHPPNVTCAWDHAGELASDLYALYDEQLDRRCMR 249


>AJ438610-9|CAD27481.1|  763|Anopheles gambiae hypothetical protein
           protein.
          Length = 763

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 311 LRVVYVPIVLHYWHHERHLAKVAVTLLLERY*RNCLR 201
           +R ++ P V   W H   LA     L  E+  R C+R
Sbjct: 213 VRPMHPPNVTCAWDHAGELASDLYALYDEQLDRRCMR 249


>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 22.6 bits (46), Expect = 6.9
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +1

Query: 340 RRRGSTWEAWCGKYRSHGPKARRFHHDRQGSVLTAALRR 456
           RRR   W     + RSH  +ARR  +  + S     LRR
Sbjct: 268 RRRAYWWTTEIAQCRSHCIEARRKMNRAKSSEQREDLRR 306


>DQ080900-1|AAY89546.1|  120|Anopheles gambiae olfactory receptor 38
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 FLKYRHSVKNKINIIIY 160
           FL+  H +K+ +N ++Y
Sbjct: 100 FLRNEHKIKSALNSVVY 116


>DQ080896-1|AAY89542.1|  120|Anopheles gambiae olfactory receptor 38
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 FLKYRHSVKNKINIIIY 160
           FL+  H +K+ +N ++Y
Sbjct: 100 FLRNEHKIKSALNSVVY 116


>DQ080892-1|AAY89538.1|  120|Anopheles gambiae olfactory receptor 38
           protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = +2

Query: 110 FLKYRHSVKNKINIIIY 160
           FL+  H +K+ +N ++Y
Sbjct: 100 FLRNEHKIKSALNSVVY 116


>AF283269-1|AAG15374.1|  114|Anopheles gambiae ribosomal protein S26
           protein.
          Length = 114

 Score = 22.2 bits (45), Expect = 9.2
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -3

Query: 49  YYCVSCGFHFNV 14
           +YCVSC  H  V
Sbjct: 71  HYCVSCAIHSKV 82


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 458,797
Number of Sequences: 2352
Number of extensions: 8519
Number of successful extensions: 49
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 563,979
effective HSP length: 59
effective length of database: 425,211
effective search space used: 40395045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)