Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0253.Seq
(465 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83102-2|CAB05464.1| 349|Caenorhabditis elegans Hypothetical pr... 31 0.31
Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical pr... 29 1.6
AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen prot... 29 1.6
U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated p... 28 3.8
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p... 28 3.8
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p... 28 3.8
U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein. 28 3.8
U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical pr... 28 3.8
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ... 28 3.8
Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical pr... 27 5.0
Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical pr... 27 5.0
AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein. 27 5.0
AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein. 27 5.0
Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical pr... 27 6.6
U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z83102-2|CAB05464.1| 349|Caenorhabditis elegans Hypothetical
protein C54C8.2 protein.
Length = 349
Score = 31.5 bits (68), Expect = 0.31
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +3
Query: 168 FIYANIFFFVSSEAISLITFQQKSHRHLREMAFMMPVVKNDWDI 299
F + + FFFV + +L+ + ++SH +A+ +P NDW++
Sbjct: 210 FQFHHKFFFVGHQIPNLMEWFERSHASNDVVAWEIPYTGNDWEV 253
>Z71178-7|CAA94881.1| 119|Caenorhabditis elegans Hypothetical
protein B0024.9 protein.
Length = 119
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 367 WCGKYRSHGPKARRFHHDRQGSVLTAAL 450
WCG ++ GP+ + RQGSVL A +
Sbjct: 41 WCGPCQALGPRLEEKVNGRQGSVLLAKI 68
>AF016671-3|AAB66109.2| 205|Caenorhabditis elegans Collagen protein
72 protein.
Length = 205
Score = 29.1 bits (62), Expect = 1.6
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +1
Query: 310 KGPVEPQNRRRRRGSTWEAWCGKYRSHGPKAR 405
KG P+ RRR STW W + + P R
Sbjct: 12 KGSTRPKRRRRNPWSTWTTWRARNHWNDPTNR 43
>U55374-8|AAB36868.3| 1538|Caenorhabditis elegans Uncoordinated
protein 2, isoform a protein.
Length = 1538
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 ISLFIVKFIYANIFFFVSS-EAISLITFQQKSHRHLRE 257
++LF V F FFFV+ A+ +ITFQ++ L E
Sbjct: 982 VALFYVMFFIVFPFFFVNIFVALIIITFQEQGEAELSE 1019
>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
protein 2, isoform c protein.
Length = 1926
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 ISLFIVKFIYANIFFFVSS-EAISLITFQQKSHRHLRE 257
++LF V F FFFV+ A+ +ITFQ++ L E
Sbjct: 982 VALFYVMFFIVFPFFFVNIFVALIIITFQEQGEAELSE 1019
>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
protein 2, isoform b protein.
Length = 2027
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 ISLFIVKFIYANIFFFVSS-EAISLITFQQKSHRHLRE 257
++LF V F FFFV+ A+ +ITFQ++ L E
Sbjct: 1101 VALFYVMFFIVFPFFFVNIFVALIIITFQEQGEAELSE 1138
>U25119-1|AAA85728.1| 1053|Caenorhabditis elegans Unc-2 protein.
Length = 1053
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 ISLFIVKFIYANIFFFVSS-EAISLITFQQKSHRHLRE 257
++LF V F FFFV+ A+ +ITFQ++ L E
Sbjct: 588 VALFYVMFFIVFPFFFVNIFVALIIITFQEQGEAELSE 625
>U13645-7|AAA20989.2| 598|Caenorhabditis elegans Hypothetical
protein C05D10.3 protein.
Length = 598
Score = 27.9 bits (59), Expect = 3.8
Identities = 12/45 (26%), Positives = 22/45 (48%)
Frame = +3
Query: 138 IKLISLFIVKFIYANIFFFVSSEAISLITFQQKSHRHLREMAFMM 272
++L+ + I FI +FF ++I+ H+R M FM+
Sbjct: 339 VRLLQILITAFITGIVFFQTPVTPATIISINGIMFNHIRNMNFML 383
>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
activated calciumchannel alpha-1 subunit protein.
Length = 2027
Score = 27.9 bits (59), Expect = 3.8
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +3
Query: 147 ISLFIVKFIYANIFFFVSS-EAISLITFQQKSHRHLRE 257
++LF V F FFFV+ A+ +ITFQ++ L E
Sbjct: 1101 VALFYVMFFIVFPFFFVNIFVALIIITFQEQGEAELSE 1138
>Z78201-3|CAD36504.1| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 357 VGGMVRKISESRSEGPAFSPRSAGLSPHRSAP 452
+GG + K+S S + G +P S L H+S P
Sbjct: 819 IGGSLAKLSASGASGSTGAPPSPALGYHQSLP 850
>Z78199-3|CAB01577.2| 1066|Caenorhabditis elegans Hypothetical
protein K12F2.2a protein.
Length = 1066
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 357 VGGMVRKISESRSEGPAFSPRSAGLSPHRSAP 452
+GG + K+S S + G +P S L H+S P
Sbjct: 819 IGGSLAKLSASGASGSTGAPPSPALGYHQSLP 850
>Z78199-2|CAB54275.1| 582|Caenorhabditis elegans Hypothetical
protein K12F2.2b protein.
Length = 582
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 357 VGGMVRKISESRSEGPAFSPRSAGLSPHRSAP 452
+GG + K+S S + G +P S L H+S P
Sbjct: 335 IGGSLAKLSASGASGSTGAPPSPALGYHQSLP 366
>AF108229-2|AAF17301.1| 582|Caenorhabditis elegans VAB-8S protein.
Length = 582
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 357 VGGMVRKISESRSEGPAFSPRSAGLSPHRSAP 452
+GG + K+S S + G +P S L H+S P
Sbjct: 335 IGGSLAKLSASGASGSTGAPPSPALGYHQSLP 366
>AF108229-1|AAF17300.1| 1066|Caenorhabditis elegans VAB-8L protein.
Length = 1066
Score = 27.5 bits (58), Expect = 5.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 357 VGGMVRKISESRSEGPAFSPRSAGLSPHRSAP 452
+GG + K+S S + G +P S L H+S P
Sbjct: 819 IGGSLAKLSASGASGSTGAPPSPALGYHQSLP 850
>Z73425-5|CAA97787.1| 427|Caenorhabditis elegans Hypothetical
protein F12F6.9 protein.
Length = 427
Score = 27.1 bits (57), Expect = 6.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 313 GPVEPQNRRRRRGSTWEAWCGKYRSHGPK 399
GP P RR R+G+ ++ G + S GPK
Sbjct: 165 GPSGPPGRRGRKGADGKSAMGGFGSPGPK 193
>U97012-9|AAK39142.2| 995|Caenorhabditis elegans Hypothetical protein
C04E6.11 protein.
Length = 995
Score = 26.6 bits (56), Expect = 8.8
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +2
Query: 2 FSECDIEVKAAAYTVILCLIQENSSLTYKFLQKPEIFL 115
FSE +E++ + +I+++S+L+ K++ KP FL
Sbjct: 933 FSEYGVELREEEKNRLAAVIEKHSTLSKKWIFKPNGFL 970
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,261,867
Number of Sequences: 27780
Number of extensions: 199568
Number of successful extensions: 571
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 547
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 571
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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