Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0CCJ1 Cluster: Chromosome undetermined scaffold_167, w...    36   1.2  
UniRef50_A0EIT5 Cluster: Chromosome undetermined scaffold_99, wh...    35   1.6  
UniRef50_A0PZG8 Cluster: Penicillin-binding protein 2; n=1; Clos...    33   5.0  
UniRef50_Q7RLB2 Cluster: Putative uncharacterized protein PY0263...    33   6.6  
UniRef50_Q4UDF0 Cluster: Putative uncharacterized protein; n=3; ...    33   8.8  

>UniRef50_A0CCJ1 Cluster: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_167,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 2595

 Score = 35.5 bits (78), Expect = 1.2
 Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 10/66 (15%)
 Frame = +1

Query: 430 HNL--TKIIPRSALTYK*YIVFTNSNKL-----HAKSHSNYIFLN---NKINIRKPT*NR 579
           HNL  T I+P+  ++ K Y  FTN++K+       +SHSNY+ LN   N++ +RK T N 
Sbjct: 253 HNLFITYILPQKIISKKKY--FTNAHKIVQRFQSCESHSNYVELNENSNQLLVRKKTLNI 310

Query: 580 FTSLIL 597
            TS  +
Sbjct: 311 STSFYI 316


>UniRef50_A0EIT5 Cluster: Chromosome undetermined scaffold_99, whole
           genome shotgun sequence; n=1; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_99,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 300

 Score = 35.1 bits (77), Expect = 1.6
 Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 7/70 (10%)
 Frame = +1

Query: 427 NHNLTKIIPRSALTYK*YIVFTNSNKLHAKSHSNYIFL---NNKINIRKPT*NR-FTSLI 594
           N +  +II R  ++   Y+ F+N+N L A+SH N I +   NNK  IRK + N+ + +LI
Sbjct: 172 NISQQRIIFRDQISSSFYVQFSNNNYLFAQSHGNNIKIKSSNNKKLIRKQSGNQNYCALI 231

Query: 595 L---MEDPFL 615
           +    +D FL
Sbjct: 232 IRFTKDDKFL 241


>UniRef50_A0PZG8 Cluster: Penicillin-binding protein 2; n=1;
           Clostridium novyi NT|Rep: Penicillin-binding protein 2 -
           Clostridium novyi (strain NT)
          Length = 1049

 Score = 33.5 bits (73), Expect = 5.0
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = -1

Query: 422 LAPLVYVNIVSEDEYEDLAKKKMIRKL 342
           L+ LVY+ IV  DEY D+  KK IR +
Sbjct: 38  LSKLVYLQIVKADEYRDMTSKKSIRNI 64


>UniRef50_Q7RLB2 Cluster: Putative uncharacterized protein PY02634;
           n=1; Plasmodium yoelii yoelii|Rep: Putative
           uncharacterized protein PY02634 - Plasmodium yoelii
           yoelii
          Length = 787

 Score = 33.1 bits (72), Expect = 6.6
 Identities = 31/106 (29%), Positives = 49/106 (46%), Gaps = 1/106 (0%)
 Frame = +1

Query: 337 HNSFRIIFFFAKSSYSSSLTIFTYTSGANANHNLTKIIPRSALTYK*YIVFTNSNKLHAK 516
           H   +I+ +F  + Y     I    S    N+N+ K I  S LT    I    ++ +   
Sbjct: 480 HEKRKIVLYFLVNKYGYH-KININMSFYMGNYNIKKEIKCSILTKSKGISINQTDFVFEN 538

Query: 517 SHSNYIFLN-NKINIRKPT*NRFTSLILMEDPFLTKNLSLIDQKSS 651
           S+S+Y F N  KIN      ++   LI +ED +  K++S  D KS+
Sbjct: 539 SYSHYGFCNIVKIN----NLDKDLKLIRLEDLYKNKSISNTDDKSN 580


>UniRef50_Q4UDF0 Cluster: Putative uncharacterized protein; n=3;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 626

 Score = 32.7 bits (71), Expect = 8.8
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = -3

Query: 180 KLLKQLVSHTIFVTNYMKLTYCNFTKFNNPCY*LVFF 70
           KLL   ++  IF++ +++  +CN+  F +P + LV F
Sbjct: 262 KLLNSCLNEDIFISLFVECFFCNYKAFQSPLFFLVLF 298


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 564,960,310
Number of Sequences: 1657284
Number of extensions: 10377691
Number of successful extensions: 19488
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19481
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 54545459628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)