Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.64 
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    28   1.1  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase Gpd1|Schizo...    25   7.9  

>SPBC354.11c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 172

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +1

Query: 325 TQINHNSFRIIFFFAKSSYSSSLTIFTYT 411
           + I +NSFRI+ F + +S +   TIFT+T
Sbjct: 137 SHILYNSFRIVLFLSHASPAILHTIFTFT 165


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -1

Query: 440 VKL*FALAPLVYVNIVSEDEYEDLAKKKMIRKLLWF 333
           VK   +L P +  NI+S   Y D+  KK +   LWF
Sbjct: 20  VKTDQSLFPEIVRNILSVANYSDIRYKKWMANFLWF 55


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1502

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = +1

Query: 598 MEDPFLTKNLSLIDQKSS 651
           + DP+L KNLS+I +KSS
Sbjct: 754 LPDPWLHKNLSVIQEKSS 771


>SPBC215.05 |gpd1||glycerol-3-phosphate dehydrogenase
           Gpd1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 385

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = -2

Query: 229 SEYVLLYCGVISGAHV 182
           SE + +YCGV+SGA+V
Sbjct: 161 SEKLGIYCGVLSGANV 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,568,408
Number of Sequences: 5004
Number of extensions: 49988
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)