Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0091 - 12774590-12774664,12774971-12775134,12775249-127753...    30   1.5  
11_06_0384 + 22990773-22990949,22991315-22991496,22992533-229928...    30   2.0  

>10_07_0091 -
           12774590-12774664,12774971-12775134,12775249-12775382,
           12775463-12775556,12775650-12775758,12776055-12776103,
           12778336-12778376,12779539-12779571,12779665-12779754,
           12780474-12780507,12781218-12781510,12781859-12782057,
           12782129-12782289,12783130-12783282,12783545-12783715,
           12783822-12783921,12784023-12784111,12784192-12784290,
           12784406-12784676,12784764-12784961,12785041-12785140,
           12785799-12785931,12786016-12786277,12787106-12787155
          Length = 1033

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -2

Query: 208 CGVISGAHVQTPQATSFTHDFCHKL 134
           CGV+S A +  P+ TS    FC KL
Sbjct: 574 CGVLSQASINCPRLTSLDASFCRKL 598


>11_06_0384 +
           22990773-22990949,22991315-22991496,22992533-22992887,
           22993124-22993426,22994077-22994313
          Length = 417

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = +1

Query: 580 FTSLILMEDPFLTKNLSLIDQKSSVFFFTLCCSKIYL 690
           FT LI   D F   +  ++D  +SV F +LCC K YL
Sbjct: 303 FTPLI---DIFTHASADMVDIHASVLFQSLCCEKSYL 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,913,271
Number of Sequences: 37544
Number of extensions: 234725
Number of successful extensions: 365
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 365
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)