Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)            30   2.0  
SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6)                  28   8.3  

>SB_22518| Best HMM Match : DUF847 (HMM E-Value=1.10001e-40)
          Length = 598

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 5/71 (7%)
 Frame = +1

Query: 343 SFRIIFFFAKSSYSSSLTIFTYTSGANANHNLTKI-IPRSALTYK*YI----VFTNSNKL 507
           +FRI F    S+YSS LT    +SGA   +N T + + R A T+K Y+      T+++ L
Sbjct: 24  NFRIDFSSGGSNYSSPLT----SSGATILNNWTHVALVREATTFKLYVNGVLKITHASAL 79

Query: 508 HAKSHSNYIFL 540
            A +   Y+FL
Sbjct: 80  -AINDGRYLFL 89


>SB_56276| Best HMM Match : Sod_Fe_C (HMM E-Value=6.6)
          Length = 196

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +1

Query: 436 LTKIIPRSALTYK*YIVFTNSNKLHAKSHSNYIFLNNKINIRKPT 570
           L++ +P SA+  + YI+F N    HA+  + YI  N KI  ++ T
Sbjct: 147 LSEKVPDSAVNIRDYILFRNDRPTHAEGVAAYI--NWKIPTKRLT 189


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,764,298
Number of Sequences: 59808
Number of extensions: 334722
Number of successful extensions: 622
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 549
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)