Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine re...    29   2.4  
Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical pr...    28   7.3  
Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical p...    27   9.6  
Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical pr...    27   9.6  
AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine re...    27   9.6  
AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical ...    27   9.6  
AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical...    27   9.6  

>AF016444-3|AAN73878.1|  320|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 11 protein.
          Length = 320

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 16/53 (30%), Positives = 29/53 (54%)
 Frame = -3

Query: 213 YIVG*LVVHMYKLLKQLVSHTIFVTNYMKLTYCNFTKFNNPCY*LVFFVNYIL 55
           +++G  ++H Y    ++V H++ + NYM L YC+       C+  VF   Y+L
Sbjct: 55  HLIG-FILHCYS---RIVIHSLDLYNYMVLDYCSMPPSTIRCF--VFRCQYVL 101


>Z81530-2|CAB04306.1|  359|Caenorhabditis elegans Hypothetical
           protein F36D1.2 protein.
          Length = 359

 Score = 27.9 bits (59), Expect = 7.3
 Identities = 21/91 (23%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
 Frame = +1

Query: 355 IFFFAKSSYSSSLTIFTYTSGANANHNLTKI---IPRSALTYK*YIVFTNSNKLHAKSHS 525
           + FF+++ ++ ++++FT T GA  +  +  I   +  SA+ Y   + + N  +L  K  +
Sbjct: 152 LIFFSQNMFACTMSVFTTTMGATFHFIILTILGSLSGSAVIYA-LVEYFNQRRL-TKLEN 209

Query: 526 NYIFLNNKINIRKPT*NRFTSLILMEDPFLT 618
            +   N  ++IR        +L LM   F++
Sbjct: 210 EHRTTNYTLSIRYQLKENLKTLKLMRQFFIS 240


>Z93383-14|CAB07631.2|  279|Caenorhabditis elegans Hypothetical
           protein F54B8.12 protein.
          Length = 279

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -1

Query: 287 LWCIII*IDCYILVDALIMFGIC 219
           L+ III I C++L D  I+FG C
Sbjct: 125 LYWIIIPILCHLLFDQCIIFGFC 147


>Z83218-6|CAI58632.1|  273|Caenorhabditis elegans Hypothetical
           protein C31A11.10 protein.
          Length = 273

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -1

Query: 290 YLWCIII*IDCYILVDALIMFGICIVIL 207
           ++W  II   C + +D  I+FG+C V++
Sbjct: 126 FVWFFII---CIVSIDQYILFGVCDVVI 150


>AF016444-6|AAB65933.1|  330|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 7 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 168 QLVSHTIFVTNYMKLTYCNFTKFNNPCY*LVFFVNYI 58
           ++V HTI + NY+ L YC+       C+  V  V Y+
Sbjct: 76  RIVLHTIDLHNYLILDYCDMPASTTRCF--VLRVQYV 110


>AF003136-2|AAK93851.1|  468|Caenorhabditis elegans Hypothetical
           protein F28B3.5a protein.
          Length = 468

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/32 (31%), Positives = 23/32 (71%)
 Frame = -1

Query: 446 IFVKL*FALAPLVYVNIVSEDEYEDLAKKKMI 351
           +FVK   ++AP++ V+++++  Y+D  K K++
Sbjct: 393 LFVKPAQSVAPVIIVHLLNQSGYQDYLKSKVL 424


>AC024776-23|AAK68459.2|  368|Caenorhabditis elegans Hypothetical
           protein Y41D4B.1 protein.
          Length = 368

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 521 CDFACNLLLLVNTIYYLYVSAERGI 447
           C FAC LLLL  T ++++   +R +
Sbjct: 236 CRFACGLLLLFFTFFFIFFIFDRNL 260


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,032,340
Number of Sequences: 27780
Number of extensions: 273766
Number of successful extensions: 541
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)