Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0252.Seq
         (692 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g33210.1 68417.m04728 F-box family protein (FBL15) contains s...    28   6.8  
At2g39800.2 68415.m04887 delta 1-pyrroline-5-carboxylate synthet...    28   6.8  
At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthet...    28   6.8  
At2g07722.1 68415.m00971 hypothetical protein                          28   6.8  
At5g15900.1 68418.m01860 expressed protein several hypothetical ...    27   8.9  
At3g02440.1 68416.m00231 expressed protein                             27   8.9  

>At4g33210.1 68417.m04728 F-box family protein (FBL15) contains
           similarity to F-box protein FBL2 GI:6063090 from [Homo
           sapiens]
          Length = 942

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -2

Query: 208 CGVISGAHVQTPQATSFTHDFCHKLHE 128
           CGV+S A +  P  TS    FC +L +
Sbjct: 679 CGVLSEASIMCPLLTSLDASFCSQLRD 705


>At2g39800.2 68415.m04887 delta 1-pyrroline-5-carboxylate synthetase
           A / P5CS A (P5CS1) identical to SP:P54887:P5C1_ARATH
          Length = 614

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 SEYVLLYCGVISGAHVQTPQATSFTHDFCHKLHETDVL 116
           S  V LY G  +   +  P+A SF H++C K    +V+
Sbjct: 467 SNGVTLYGGPRASKILNIPEARSFNHEYCAKACTVEVV 504


>At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthetase
           A / P5CS A (P5CS1) identical to SP:P54887:P5C1_ARATH
          Length = 717

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 229 SEYVLLYCGVISGAHVQTPQATSFTHDFCHKLHETDVL 116
           S  V LY G  +   +  P+A SF H++C K    +V+
Sbjct: 570 SNGVTLYGGPRASKILNIPEARSFNHEYCAKACTVEVV 607


>At2g07722.1 68415.m00971 hypothetical protein
          Length = 139

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +3

Query: 639 SEKFCFFFYIVLF*N 683
           S K+CFFF++VLF N
Sbjct: 74  SAKYCFFFFLVLFLN 88


>At5g15900.1 68418.m01860 expressed protein several hypothetical
           proteins - Arabidopsis thaliana
          Length = 426

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -2

Query: 208 CGVISGAHVQTPQATSFTHDFCHKLHE 128
           C + SG  V  P+A  +T+  C  +HE
Sbjct: 67  CDIFSGEWVPNPEAPYYTNTTCWAIHE 93


>At3g02440.1 68416.m00231 expressed protein
          Length = 373

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 208 CGVISGAHVQTPQATSFTHDFCHKLHE 128
           C + SG  +  P+A  +T+  C  +HE
Sbjct: 127 CDIFSGEWIPNPKAPYYTNTTCRAIHE 153


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,464,965
Number of Sequences: 28952
Number of extensions: 224545
Number of successful extensions: 347
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)