Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protei...    23   1.9  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   3.4  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.9  
AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle pr...    22   5.9  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   7.8  

>L01617-1|AAA30097.1|   46|Tribolium castaneum zinc finger protein
           protein.
          Length = 46

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = -2

Query: 583 PCLCTRCPDAGCSRW 539
           PC CT CP A    W
Sbjct: 7   PCKCTICPKAFSRPW 21


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 465  LSKSPAALSPDPCCWYRL 412
            L ++   L  DP CWY L
Sbjct: 1545 LGQNFVLLDLDPACWYHL 1562


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 10/31 (32%), Positives = 14/31 (45%)
 Frame = -2

Query: 649 RSRDANYRQPRRSFRDEPTIWTPCLCTRCPD 557
           + R A YR  +R  ++ P IW        PD
Sbjct: 78  KQRTAAYRSIKRLKKEYPKIWEQLRAVWDPD 108


>AJ518940-1|CAD57734.1|  361|Tribolium castaneum extradenticle
           protein.
          Length = 361

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 13/21 (61%)
 Frame = +2

Query: 245 YRSDLKQARDCYYRASESYKK 307
           YR+ L Q R  Y++  E Y++
Sbjct: 147 YRAKLAQIRQIYHQELEKYEQ 167


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 13/48 (27%), Positives = 21/48 (43%)
 Frame = +2

Query: 161  IPEDVCAPLETGLRFGCR*ILSSSSVLPYRSDLKQARDCYYRASESYK 304
            +P D+   L T + +G   + SSS  L          + +Y+   SYK
Sbjct: 2341 LPSDIDPSLCTHINYGFAVLDSSSMTLKPHDSWADIDNEFYKKVVSYK 2388


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 154,219
Number of Sequences: 336
Number of extensions: 3036
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19675845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)