Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyc...    26   4.8  
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch...    26   4.8  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.5  

>SPAC1782.01 ||SPAPYUG7.07|proteasome component|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1679

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/79 (29%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +2

Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSGDSAAG 454
           C+   S S  KN +FF A  AL   L++G  +S      N A   S +       +  + 
Sbjct: 649 CFTIISTSNNKNDNFFKAETAL---LIIGYTISYLAAQTNSAAVDSFILNSGSIKEFFSV 705

Query: 455 LLDKAG-RILEQDTPQLAV 508
           LL+  G  +L + T  LA+
Sbjct: 706 LLEYLGSNVLHKKTTSLAI 724


>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1316

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 6/61 (9%)
 Frame = +2

Query: 371  SNADELFNLALEASSLYQ------QHGSGDSAAGLLDKAGRILEQDTPQLAVSCTSMLPI 532
            S +D+LFNL L  S+L        + G     +  L K         P  A+ C S L +
Sbjct: 1149 SESDDLFNLDLPISNLETSYPFKIEEGQASPLSSPLSKTPPFFSSSVPLKALICVSKLNL 1208

Query: 533  F 535
            F
Sbjct: 1209 F 1209


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 133 ASSIFVDIVTVKNHNLRGARHTTDSGSNEIQL 38
           A S+ VD +   N+NL      TDS +NE  L
Sbjct: 38  ALSLKVDEILKTNYNLINPEDVTDSDNNEFAL 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,728,131
Number of Sequences: 5004
Number of extensions: 49795
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)