Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595...    29   2.9  
02_05_0885 - 32488750-32489145,32489372-32490040,32490245-324903...    29   2.9  
02_05_1248 - 35237036-35237252,35237843-35239491                       29   3.8  
04_01_0123 - 1283197-1283292,1283330-1284439,1284790-1285177,128...    28   6.7  
08_01_0656 + 5652383-5653009,5653260-5653736,5654969-5655289,565...    28   8.8  
05_06_0152 - 26008495-26009074,26010555-26011361,26016536-260166...    28   8.8  
02_04_0054 + 19279579-19280772                                         28   8.8  

>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
            10759617-10759709,10759913-10760008,10760457-10760724,
            10760805-10761047,10761298-10761422,10761499-10761615,
            10761705-10761779,10761886-10761942,10762035-10762139,
            10762244-10762330,10762790-10763047,10763075-10763263,
            10763418-10763528,10763640-10763729,10763814-10763990,
            10764075-10764152,10764412-10764726,10764819-10765162,
            10765304-10765541,10765631-10765998,10766106-10766316,
            10766622-10766801,10766886-10769045,10769151-10769207
          Length = 2251

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/49 (30%), Positives = 27/49 (55%)
 Frame = +3

Query: 72   CLAPLRL*FFTVTMSTKIEEALEHIKTAQKYLKTSVLRWKPDFDSAADE 218
            C +P    FFT+ ++ K  + LEH K ++  L+TS+ R   + +   +E
Sbjct: 964  CYSPENDTFFTLQLALKASQLLEHTKLSE--LRTSIARSLSELEMFTEE 1010


>02_05_0885 -
           32488750-32489145,32489372-32490040,32490245-32490301,
           32490814-32491152
          Length = 486

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = -2

Query: 667 SLQDGTRSRDANYRQPRRSFRDEPTIWTPCLCTRCPDAGCSRWQK 533
           S+ D T++ D  YR  R +F    ++  PCL    P A  S W +
Sbjct: 425 SVTDRTKASDLPYRVCRYTFYTVLSVILPCLAGLLPFASLSDWNE 469


>02_05_1248 - 35237036-35237252,35237843-35239491
          Length = 621

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/46 (34%), Positives = 26/46 (56%)
 Frame = +2

Query: 350 LLVGKELSNADELFNLALEASSLYQQHGSGDSAAGLLDKAGRILEQ 487
           +L  KEL+  D++    +E SSLY+     D A  LL ++  +LE+
Sbjct: 397 ILEKKELAAPDKVAEAYVEVSSLYEMVNEFDKAISLLKRSLGMLER 442


>04_01_0123 -
           1283197-1283292,1283330-1284439,1284790-1285177,
           1285523-1287609
          Length = 1226

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = -2

Query: 712 PARWPRTVCPRPASYSLQDGTRSRDANYRQPRRSF-RDEPT 593
           P R PR   P P+  S    + S  ++ R PRR+  R +PT
Sbjct: 380 PGRHPRNRTPEPSDPSSSSSSASFSSSDRHPRRTHDRRQPT 420


>08_01_0656 +
           5652383-5653009,5653260-5653736,5654969-5655289,
           5655434-5655589,5656062-5656127,5656196-5656315
          Length = 588

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +3

Query: 333 KLWSKPCSSARSSAMLTSCSTWHWRPLACTSSMGPGTAPP 452
           K  S P  +   +    SC    WR  AC+ + G  + PP
Sbjct: 21  KTGSAPSPTRSCTTSCRSCGRGRWRAPACSPAAGATSGPP 60


>05_06_0152 -
           26008495-26009074,26010555-26011361,26016536-26016657,
           26016860-26017462
          Length = 703

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +3

Query: 348 PCSSARSSAMLTSCSTWHWRPLACTSSMGPGTAPPDSWTRPVAS*SRTHPS 500
           PCS    SA    C      PL+C SS+  G   P S T  + + SR H S
Sbjct: 555 PCSPRSPSAQPPLCRGLDRHPLSCLSSLRSG---PPSATTFIFTTSRAHLS 602


>02_04_0054 + 19279579-19280772
          Length = 397

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +2

Query: 194 GLRFGCR*ILSSSSVLPYRSDLKQARDCYYRASESYKKNRSFFHAAKALEQALLV-GKEL 370
           GLR  C   L     LPY S          R   S K+N   FH    L  A     + +
Sbjct: 238 GLRSKCINWLKEWQALPYTSPYADPSGLDRRTDVSEKRNVGVFHELLHLTVAKRTERRNV 297

Query: 371 SNADELFNLALEASSLYQQH 430
           SN  +L  +  + + ++++H
Sbjct: 298 SNMRKLLGMPQKFTKVFERH 317


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,651,419
Number of Sequences: 37544
Number of extensions: 398576
Number of successful extensions: 1435
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1434
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)