Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0248.Seq
(734 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_1442| Best HMM Match : SRCR (HMM E-Value=0) 30 2.2
SB_28211| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.0
SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12) 29 3.9
SB_174| Best HMM Match : Homeobox (HMM E-Value=1.9e-19) 29 3.9
SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028) 29 5.2
SB_39894| Best HMM Match : Pox_A32 (HMM E-Value=0.59) 28 6.8
SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1) 28 6.8
SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.8
SB_10280| Best HMM Match : F-box (HMM E-Value=5.2e-09) 28 6.8
SB_40758| Best HMM Match : Pox_A32 (HMM E-Value=0.007) 28 9.0
SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0) 28 9.0
SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6) 28 9.0
SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0) 28 9.0
>SB_1442| Best HMM Match : SRCR (HMM E-Value=0)
Length = 2103
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/64 (37%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Frame = +3
Query: 273 TATTALQRAIRRTGRSSTRLKLWSKPCSSARSSAMLTSCS-TWHWRP---LACTSSMGPG 440
T+TT L + + +S + P S+ RSS TS + T P LA TSS+GP
Sbjct: 268 TSTTELPTSFTKVVPTSLLEPTTTIPTSATRSSMAHTSIAPTSSLAPTSSLAPTSSVGPT 327
Query: 441 TAPP 452
T+PP
Sbjct: 328 TSPP 331
>SB_28211| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 153
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +2
Query: 296 SYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSGDSAAGLLD 463
+Y KN+S+ A + L++ + SN DE+ L + ++L+ SG S +LD
Sbjct: 32 TYAKNKSYHRFAHGDRRFLVLSPDASNTDEINELLTDCAALF----SGTSTLLVLD 83
>SB_32247| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2209
Score = 29.5 bits (63), Expect = 3.0
Identities = 33/104 (31%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Frame = +3
Query: 264 KPGTATTALQRAIRRTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRPLACTSSM---G 434
KP AL R++ SS+R S S + SS L S ++W SSM
Sbjct: 503 KPYFLNMALMRSLSGFWLSSSRFSRSSSSISDSLSS--LRSRASWRLLSDVLGSSMVSLS 560
Query: 435 PGTAPPDSWTRPVAS--*SRTHPS*P*AVPACCRYFCQREQPAS 560
T P SWTR V S + T + P A R+ R P S
Sbjct: 561 VATTPCSSWTRSVFSWMTASTSATDPIASSKPLRFATSRRMPPS 604
>SB_9492| Best HMM Match : Rho_N (HMM E-Value=2.1e-12)
Length = 1970
Score = 29.1 bits (62), Expect = 3.9
Identities = 17/56 (30%), Positives = 31/56 (55%)
Frame = +2
Query: 296 SYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSGDSAAGLLD 463
+Y KN+S+ A ++ L++ + SN DE+ L + ++L+ SG S +LD
Sbjct: 1699 TYAKNKSYRRFAHGDKRFLVLSPDASNTDEINELLTDCAALF----SGTSTLLVLD 1750
>SB_174| Best HMM Match : Homeobox (HMM E-Value=1.9e-19)
Length = 149
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +1
Query: 490 HTPASRELYQHAADISANESSQHQGIEYIS 579
HTP +R Y + D+ +S+ H+ +YI+
Sbjct: 119 HTPKTRHRYPESVDVRTFQSNSHRSRDYIN 148
>SB_17295| Best HMM Match : Cu2_monooxygen (HMM E-Value=0.00028)
Length = 616
Score = 28.7 bits (61), Expect = 5.2
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 577 SKASRLLVRLESYDEAVDNLRREIGFHLEANNLPAVGR 690
S + L +R + +DNL R++G E+NNL A R
Sbjct: 342 SNRNSLYIRNTTNSNNIDNLTRQMGSSSESNNLVAQNR 379
>SB_39894| Best HMM Match : Pox_A32 (HMM E-Value=0.59)
Length = 565
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/56 (28%), Positives = 31/56 (55%)
Frame = +2
Query: 296 SYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSGDSAAGLLD 463
+Y KN+S+ A + L++ + SN+DE+ L + + L+ SG + + +LD
Sbjct: 259 TYAKNKSYHRFAHGDRRFLVLSPDASNSDEINELLTDCAVLF----SGTNTSLVLD 310
>SB_2877| Best HMM Match : Hom_end (HMM E-Value=1.1)
Length = 1250
Score = 28.3 bits (60), Expect = 6.8
Identities = 26/75 (34%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 264 KPGTATTALQRAIRRTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRPLACTSSM---G 434
KP AL R++ SS+R S S + SS L S ++W + SSM
Sbjct: 384 KPYFLKMALMRSLSGFWFSSSRFSRSSSSISYSLSS--LRSRASWRRQSDVLGSSMVSLS 441
Query: 435 PGTAPPDSWTRPVAS 479
T P SWTR V S
Sbjct: 442 AATTPCSSWTRSVFS 456
>SB_22139| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1472
Score = 28.3 bits (60), Expect = 6.8
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Frame = +3
Query: 264 KPGTATTALQRAIRRTGRSSTRLKLWSKPCSSARSS-AMLTSCSTWHWRPLACTSSM--- 431
KP AL R++ SS+R +S+P SS S + L S ++W SSM
Sbjct: 378 KPYFLKMALMRSLSGFWFSSSR---FSRPSSSISDSLSSLRSRASWWLLSDVLGSSMVSL 434
Query: 432 GPGTAPPDSWTRPVAS 479
T P SWTR V S
Sbjct: 435 SVATTPGSSWTRSVFS 450
>SB_10280| Best HMM Match : F-box (HMM E-Value=5.2e-09)
Length = 438
Score = 28.3 bits (60), Expect = 6.8
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 227 SSSVLPYRSDLKQARDCYYRASESYKKNRSFFH 325
S++ L R +L ++RD YR+SES K++ H
Sbjct: 46 STNDLRSRENLSKSRDKLYRSSESLHKSKESMH 78
>SB_40758| Best HMM Match : Pox_A32 (HMM E-Value=0.007)
Length = 208
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/42 (28%), Positives = 24/42 (57%)
Frame = +2
Query: 296 SYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLY 421
+Y KN+S+ A ++ L++ + SN DE+ L + + L+
Sbjct: 47 TYAKNKSYHRFAHGDKRFLVLSPDASNTDEINELLTDCAVLF 88
>SB_12798| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 306 RTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRPLACTSSMG 434
RTGR + + +L KP S + + T W W C S+ G
Sbjct: 196 RTGRFNAKGELVEKPMGSPTNVLLGTFMLWWGWLGFNCGSTFG 238
>SB_46572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 27.9 bits (59), Expect = 9.0
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 228 AAQCYRIART*SKPGTATTALQRAIRRTGRSSTRLKLWSKPCSSARSSA 374
AA+C RI R + T L + + R++ W K C SSA
Sbjct: 532 AARCRRINRLIGRREDRQTRLDLGLEPKVKKKVRVRRWVKECHQTLSSA 580
>SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6)
Length = 198
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/49 (28%), Positives = 29/49 (59%)
Frame = -2
Query: 169 FRYF*AVLMCSKASSIFVDIVTVKNHNLRGARHTTDSGSNEIQLNTNKS 23
FR + ++ ++AS++FV + + G RHT+DS ++E +N ++
Sbjct: 79 FRMSFSAIITARASALFVR----QRYKQLGVRHTSDSSTSESMVNLREA 123
>SB_21704| Best HMM Match : Ammonium_transp (HMM E-Value=0)
Length = 492
Score = 27.9 bits (59), Expect = 9.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +3
Query: 306 RTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRPLACTSSMG 434
RTGR + + +L KP S + + T W W C S+ G
Sbjct: 196 RTGRFNAKGELVEKPMGSPTNVLLGTFMLWWGWLGFNCGSTFG 238
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,645,528
Number of Sequences: 59808
Number of extensions: 429603
Number of successful extensions: 1698
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1698
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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