Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78107-1|AAB69753.1|  312|Homo sapiens gamma SNAP protein.             69   2e-11
CR536554-1|CAG38791.1|  312|Homo sapiens NAPG protein.                 69   2e-11
BC001889-1|AAH01889.1|  312|Homo sapiens N-ethylmaleimide-sensit...    69   2e-11
L08238-1|AAA59592.1|  394|Homo sapiens MG44 protein.                   30   9.9  

>U78107-1|AAB69753.1|  312|Homo sapiens gamma SNAP protein.
          Length = 312

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 55/83 (66%)
 Frame = +2

Query: 260 KQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSG 439
           +QA+D   R + +++ NR+ FHAAKA EQA ++ KE+    E   L  +AS +Y ++G+ 
Sbjct: 52  EQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTP 111

Query: 440 DSAAGLLDKAGRILEQDTPQLAV 508
           D+AA  L++AG+++E   P+ AV
Sbjct: 112 DTAAMALERAGKLIENVDPEKAV 134



 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 120 KIEEALEHIKTAQKYLKTSVLRWKPDFDSAADEFCQAAQCYRIAR 254
           KI E LEH+  A+KYLKT  L+WKPD+DSAA E+ +AA  ++ A+
Sbjct: 5   KINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAK 49



 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +1

Query: 508 ELYQHAADISANESSQHQGIEYISKASRLLVRLESYDEAVDNLRREIGFHLEANNLPAVG 687
           +LYQ  A++  NE    Q +E + KASRLLVR   +DEA  ++++E   + E  N P   
Sbjct: 135 QLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCY 194

Query: 688 RLCVAIVLVQL 720
           +  +A VLV L
Sbjct: 195 KKTIAQVLVHL 205


>CR536554-1|CAG38791.1|  312|Homo sapiens NAPG protein.
          Length = 312

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 55/83 (66%)
 Frame = +2

Query: 260 KQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSG 439
           +QA+D   R + +++ NR+ FHAAKA EQA ++ KE+    E   L  +AS +Y ++G+ 
Sbjct: 52  EQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTP 111

Query: 440 DSAAGLLDKAGRILEQDTPQLAV 508
           D+AA  L++AG+++E   P+ AV
Sbjct: 112 DTAAMALERAGKLIENVDPEKAV 134



 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 120 KIEEALEHIKTAQKYLKTSVLRWKPDFDSAADEFCQAAQCYRIAR 254
           KI E LEH+  A+KYLKT  L+WKPD+DSAA E+ +AA  ++ A+
Sbjct: 5   KINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAK 49



 Score = 55.6 bits (128), Expect = 2e-07
 Identities = 28/71 (39%), Positives = 41/71 (57%)
 Frame = +1

Query: 508 ELYQHAADISANESSQHQGIEYISKASRLLVRLESYDEAVDNLRREIGFHLEANNLPAVG 687
           +LYQ  A++  NE    Q +E + KASRLLVR   +DEA  ++++E   + E  N P   
Sbjct: 135 QLYQQTANVFENEERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCY 194

Query: 688 RLCVAIVLVQL 720
           +  +A VLV L
Sbjct: 195 KKTIAQVLVHL 205


>BC001889-1|AAH01889.1|  312|Homo sapiens N-ethylmaleimide-sensitive
           factor attachment protein, gamma protein.
          Length = 312

 Score = 68.5 bits (160), Expect = 2e-11
 Identities = 33/83 (39%), Positives = 55/83 (66%)
 Frame = +2

Query: 260 KQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHGSG 439
           +QA+D   R + +++ NR+ FHAAKA EQA ++ KE+    E   L  +AS +Y ++G+ 
Sbjct: 52  EQAKDACLREAVAHENNRALFHAAKAYEQAGMMLKEMQKLPEAVQLIEKASMMYLENGTP 111

Query: 440 DSAAGLLDKAGRILEQDTPQLAV 508
           D+AA  L++AG+++E   P+ AV
Sbjct: 112 DTAAMALERAGKLIENVDPEKAV 134



 Score = 59.7 bits (138), Expect = 1e-08
 Identities = 25/45 (55%), Positives = 34/45 (75%)
 Frame = +3

Query: 120 KIEEALEHIKTAQKYLKTSVLRWKPDFDSAADEFCQAAQCYRIAR 254
           KI E LEH+  A+KYLKT  L+WKPD+DSAA E+ +AA  ++ A+
Sbjct: 5   KINEGLEHLAKAEKYLKTGFLKWKPDYDSAASEYGKAAVAFKNAK 49



 Score = 54.4 bits (125), Expect = 4e-07
 Identities = 27/71 (38%), Positives = 41/71 (57%)
 Frame = +1

Query: 508 ELYQHAADISANESSQHQGIEYISKASRLLVRLESYDEAVDNLRREIGFHLEANNLPAVG 687
           +LYQ  A++  N+    Q +E + KASRLLVR   +DEA  ++++E   + E  N P   
Sbjct: 135 QLYQQTANVFENDERLRQAVELLGKASRLLVRGRRFDEAALSIQKEKNIYKEIENYPTCY 194

Query: 688 RLCVAIVLVQL 720
           +  +A VLV L
Sbjct: 195 KKTIAQVLVHL 205


>L08238-1|AAA59592.1|  394|Homo sapiens MG44 protein.
          Length = 394

 Score = 29.9 bits (64), Expect = 9.9
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 315 RSSTRLKLWSKPCSSARSSAMLTSC--STWHWRPLACTSSM 431
           R    L L  +P   ARSS ++T+C  + W WR  A T ++
Sbjct: 323 RLPASLSLPQEPSGQARSSPLITTCKWTPWTWRAPAWTPTL 363


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,375,836
Number of Sequences: 237096
Number of extensions: 2008200
Number of successful extensions: 6260
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6258
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8735159784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)