Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= pg--0248.Seq
(734 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-17|CAB60957.2| 299|Caenorhabditis elegans Hypothetical... 58 6e-09
Z92822-9|CAL49448.1| 576|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z82094-5|CAL49446.1| 576|Caenorhabditis elegans Hypothetical pr... 32 0.48
Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical pr... 32 0.48
DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein. 32 0.48
L07144-8|AAK21442.1| 421|Caenorhabditis elegans Hypothetical pr... 29 3.4
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p... 28 6.0
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr... 28 6.0
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 28 7.9
>AL132898-17|CAB60957.2| 299|Caenorhabditis elegans Hypothetical
protein Y59A8B.8 protein.
Length = 299
Score = 58.0 bits (134), Expect = 6e-09
Identities = 31/85 (36%), Positives = 52/85 (61%)
Frame = +2
Query: 254 DLKQARDCYYRASESYKKNRSFFHAAKALEQALLVGKELSNADELFNLALEASSLYQQHG 433
D K+A +A+E Y++NR+ FHAAKA E A ++ +++ E L +A + Y + G
Sbjct: 53 DPKKAAGSLLKAAEYYEQNRNLFHAAKAREGAAMLLRDIKEFSEAVVLFEKAINGYAESG 112
Query: 434 SGDSAAGLLDKAGRILEQDTPQLAV 508
S D+AA ++KA +L+ D P+ A+
Sbjct: 113 SLDTAAMTVEKAADVLKNDNPKEAL 137
Score = 39.5 bits (88), Expect = 0.002
Identities = 20/49 (40%), Positives = 33/49 (67%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 STKIEEALEHIKTAQKYLKTSV--LRWKPDFDSAADEFCQAAQCYRIAR 254
+ +++EA E + A+ +KTS+ L++KPDFD AA +A+ CYR A+
Sbjct: 4 TARLKEAAECERKAEDCMKTSMIKLKFKPDFDGAASAMERASVCYRNAQ 52
>Z92822-9|CAL49448.1| 576|Caenorhabditis elegans Hypothetical
protein ZK520.3b protein.
Length = 576
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNAD--ELFNLALEASSLYQQHGSGDSA 448
C A E +KN + AKA+EQ + + L A+ N A+ Y Q G ++A
Sbjct: 217 CVQEAFELAEKNNAVREYAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNA 276
Query: 449 AGLLDKAGRILEQDTPQLAVSC 514
LL K G +++ LAV C
Sbjct: 277 INLLFKNGD--DENCVALAVDC 296
>Z92822-8|CAL49447.1| 1383|Caenorhabditis elegans Hypothetical protein
ZK520.3a protein.
Length = 1383
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNAD--ELFNLALEASSLYQQHGSGDSA 448
C A E +KN + AKA+EQ + + L A+ N A+ Y Q G ++A
Sbjct: 1024 CVQEAFELAEKNNAVREYAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNA 1083
Query: 449 AGLLDKAGRILEQDTPQLAVSC 514
LL K G +++ LAV C
Sbjct: 1084 INLLFKNGD--DENCVALAVDC 1103
>Z82094-5|CAL49446.1| 576|Caenorhabditis elegans Hypothetical
protein ZK520.3b protein.
Length = 576
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNAD--ELFNLALEASSLYQQHGSGDSA 448
C A E +KN + AKA+EQ + + L A+ N A+ Y Q G ++A
Sbjct: 217 CVQEAFELAEKNNAVREYAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNA 276
Query: 449 AGLLDKAGRILEQDTPQLAVSC 514
LL K G +++ LAV C
Sbjct: 277 INLLFKNGD--DENCVALAVDC 296
>Z82094-4|CAL49445.1| 1383|Caenorhabditis elegans Hypothetical protein
ZK520.3a protein.
Length = 1383
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNAD--ELFNLALEASSLYQQHGSGDSA 448
C A E +KN + AKA+EQ + + L A+ N A+ Y Q G ++A
Sbjct: 1024 CVQEAFELAEKNNAVREYAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNA 1083
Query: 449 AGLLDKAGRILEQDTPQLAVSC 514
LL K G +++ LAV C
Sbjct: 1084 INLLFKNGD--DENCVALAVDC 1103
>DQ314286-1|ABC42046.1| 1383|Caenorhabditis elegans DYF-2 protein.
Length = 1383
Score = 31.9 bits (69), Expect = 0.48
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
Frame = +2
Query: 275 CYYRASESYKKNRSFFHAAKALEQALLVGKELSNAD--ELFNLALEASSLYQQHGSGDSA 448
C A E +KN + AKA+EQ + + L A+ N A+ Y Q G ++A
Sbjct: 1024 CVQEAFELAEKNNAVREYAKAIEQHGNISQALELAEYYNRVNDMFMAAKFYTQAGQYNNA 1083
Query: 449 AGLLDKAGRILEQDTPQLAVSC 514
LL K G +++ LAV C
Sbjct: 1084 INLLFKNGD--DENCVALAVDC 1103
>L07144-8|AAK21442.1| 421|Caenorhabditis elegans Hypothetical
protein R05D3.3 protein.
Length = 421
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/37 (45%), Positives = 19/37 (51%)
Frame = +2
Query: 422 QQHGSGDSAAGLLDKAGRILEQDTPQLAVSCTSMLPI 532
Q GSGDS+ L G E PQ SCTSM P+
Sbjct: 135 QNAGSGDSSVTLSSALG---EDAVPQNRGSCTSMKPV 168
>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
protein 44, isoform f protein.
Length = 6994
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 487 GHTPASRELYQHAADISANESSQHQGIEYISKASRLLVRLESYDEAVDNLRRE 645
G +P + E ++H + +++ S+ I + V E YD+ D L+RE
Sbjct: 3637 GESPVATEEHEHVSSTKSDDESEQHVPSVIETTTTTTVTREFYDDQ-DELQRE 3688
>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
protein.
Length = 6994
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/53 (26%), Positives = 26/53 (49%)
Frame = +1
Query: 487 GHTPASRELYQHAADISANESSQHQGIEYISKASRLLVRLESYDEAVDNLRRE 645
G +P + E ++H + +++ S+ I + V E YD+ D L+RE
Sbjct: 3637 GESPVATEEHEHVSSTKSDDESEQHVPSVIETTTTTTVTREFYDDQ-DELQRE 3688
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = +3
Query: 273 TATTALQRAIR-RTGRSSTRLKLWSKPCSSARSSAMLTSCSTWHWRPLACTSSMGPGTAP 449
T TTA R T R++T L S+P + + ++ T+ PLA T + P + P
Sbjct: 282 TTTTAAPTTPRLTTARATTPLATTSRPTTPSPTTPRATTPLAT--TPLATTRAPLPPSPP 339
Query: 450 PDSWTRPV 473
P + RPV
Sbjct: 340 PRTSKRPV 347
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,493,665
Number of Sequences: 27780
Number of extensions: 297632
Number of successful extensions: 1006
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1724918872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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