Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= pg--0248.Seq
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    23   2.3  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   6.9  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 619 EAVDNLRREIGFHLEANNLPA 681
           + V NLRR +G+HL    +P+
Sbjct: 204 QIVFNLRRRLGYHLFHTYIPS 224


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 115  DIVTVKNHNLRGARHTTDSGSNE 47
            D VTV  +NL     T  SGS+E
Sbjct: 1302 DAVTVPGNNLIATNTTVSSGSSE 1324


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -3

Query: 198 SPVSSGAQTSSGISELF 148
           SP S G++  +GIS+LF
Sbjct: 104 SPTSLGSENYTGISDLF 120


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -3

Query: 252  ERYGSTELLDRIHRQPNRSPVSSGAQTSS 166
            E   S  L+D++ R   R+PV   AQ SS
Sbjct: 1321 ESMRSKALIDQLCRNSRRTPVPRLAQDSS 1349


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +1

Query: 502 SRELYQHAADISANESSQHQGIEYISKAS 588
           S++ +QHAA +       H G+   S  S
Sbjct: 792 SQQRHQHAAQMIYGHQQSHHGLHINSSPS 820


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,365
Number of Sequences: 438
Number of extensions: 3375
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)